SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene156015

Length: 241 nt

UniGene Fasta

>sp_v3.0_unigene156015
CGTTCTGAGCCTGACGCGCGGGCGGTGCAGCGCGAGGCGCGGGGCCGGCGGCGATGTTCTTCCACATTCAGCTGCAGCGCACCGTGGTGCTGCAGCCGCGGTACTTTGGGCCGAACGTGCGGAACACGCTCATCGAGCGCCTGTACGCCGAGGTGGAGGGCACCTGCTCGGGGCGCTACGGCTACGTCATCACGGTGACGAACGTGACGGACGTGGGCCTCGGGAAGATTCAGGACGCCAC

Ace file of the UniGene sp_v3.0_unigene156015

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like n=1 Tax=Monodelphis domestica RepID=UPI00020F6F8D	-	-	1.0e-14	55%
FL-Next	sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	54%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G59180.1	NRPB7 DNA-directed RNA polymerase II chr5:23883499-23884976 FORWARD LENGTH=176	1.0e-17	49%
RefSeq	Arabidopsis thaliana	NP_200726.1	DNA-directed RNA polymerase II subunit RPB7 [Arabidopsis thaliana]	1.0e-17	49%
RefSeq	Populus trichocarpa	XP_002298912.1	predicted protein [Populus trichocarpa]	4.0e-18	49%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: P46279

Fln msg: Distance to subject end: 113 aas, your sequence is shorter than subject: 62 - 176

Fln protein: MFFHIQLQRTVVLQPRYFGPNVRNTLIERLYAEVEGTCSGRYGYVITVTNVTDVGLGKIQDA

Protein Length: 63

Fln nts: CGTTCTGAGCCTGACGCGCGGGCGGTGCAGCGCGAGGCGCGGGGCCGGCGGCG_-_ATGTTCTTCCACATTCAGCTGCAGCGCACCGTGGTGCTGCAGCCGCGGTACTTTGGGCCGAACGTGCGGAACACGCTCATCGAGCGCCTGTACGCCGAGGTGGAGGGCACCTGCTCGGGGCGCTACGGCTACGTCATCACGGTGACGAACGTGACGGACGTGGGCCTCGGGAAGATTCAGGACGCCAC

Fln Alignment:

HLKU4M004JGN0O___MFFHIQLQRTVVLQPRYFGPNVRNTLIERLYAEVEGTCSGRYGYVITVTNVTDVGLGKIQD
P46279________________MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIRD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain