SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene155987

Length: 426 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene155987 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S25, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NLP0_PHYIT	-	-	4.0e-28	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	40S ribosomal protein S25	-	-	2.235e-16	-

Source	Gene names
Sma3	At2g16360; At2g21580; At4g34555; At4g39200; CHLREDRAFT_57302; CM0216.350.nc; F16F14.14; F2G1.15; GSVIVT00001420001; GSVIVT00007016001; GSVIVT00036348001; MICPUCDRAFT_28202; OJ1003_C09.15; Os08g0559200; Os09g0568800; Os11g0153800; OsI_32455; OsJ_28274; OsJ

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S25	IPR004977	-	0.0	-
Sma3	NMD3	IPR007064	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G21580.1	Ribosomal protein S25 family protein chr2:9236629-9237510 FORWARD LENGTH=108	2.0e-20	56%
RefSeq	Arabidopsis thaliana	NP_001031390.1	40S ribosomal protein S25-2 [Arabidopsis thaliana]	2.0e-20	56%
RefSeq	Populus trichocarpa	XP_002306117.1	predicted protein [Populus trichocarpa]	1.0e-18	53%

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain