SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene155871

Length: 256 nt

UniGene Fasta

>sp_v3.0_unigene155871
TGGAAGCCGGATAGCTTTTACAATAAGATCAAATCTAATAAAGATCGAGGTCAACATACTCTTTGTTTATTGGATATTAAAGTGAAAGAACAATCGGAAGAAAATCTTTTGCGTCGCAAGAAAATATATGAACCTCCAAGATTTATGTCCGTGCAGGTTTGTATTGATCAATTACTTGAAATTGAAGCAATTCGCCAAGAAAATGTGTACAATGAAAATACAAAATGTATTGGATTAGCCCGAATTGGTCAACCCA

Ace file of the UniGene sp_v3.0_unigene155871

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Diphthamide biosynthesis protein 5 n=1 Tax=Dictyostelium fasciculatum RepID=F4PZN1_9MYCE	-	-	3.0e-28	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	Diphthine synthase	-	-	7.599e-25	-

Source	ECs	Term	Type	e value	Identity
Sma3	Diphthine synthase.	EC:2.1.1.98	-	3.414e-33	-

Source	Gene names
Sma3	At4g31790; CHLREDRAFT_122908; F28M20.20; GSVIVT00014439001; LOC_Os03g23970; MICPUCDRAFT_22456; MICPUN_88722; Os03g0355800; OsI_11605; PHATRDRAFT_5236; PHYPADRAFT_198807; POPTRDRAFT_1071060; RCOM_1597420; THAPSDRAFT_20788;

Source	GOs	Term	Type	e value	Identity
Sma3	diphthine synthase activity	GO:0004164	Molecular Function	0.0	-
Sma3	peptidyl-diphthamide biosynthetic process from peptidyl-histidine	GO:0017183	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Tetrapyrrole methylase	IPR000878	-	-
Sma3	Diphthine synthase	IPR004551	-	-
Sma3	Tetrapyrrole methylase, subdomain 2	IPR014776	-	-
Sma3	Tetrapyrrole methylase, subdomain 1	IPR014777	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G31790.1	Tetrapyrrole (Corrin/Porphyrin) Methylases chr4:15377479-15378530 FORWARD LENGTH=277	5.0e-29	59%
RefSeq	Arabidopsis thaliana	NP_974655.1	diphthine synthase [Arabidopsis thaliana]	6.0e-29	59%
RefSeq	Populus trichocarpa	XP_002300714.1	predicted protein [Populus trichocarpa]	1.0e-33	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADY9

Fln msg: Distance to subject end: 55 aas, your sequence is shorter than subject: 85 - 284

Fln protein: WKPDSFYNKIKSNKDRGQHTLCLLDIKVKEQSEENLLRRKKIYEPPRFMSVQVCIDQLLEIEAIRQENVYNENTKCIGLARIGQP

Protein Length: 86

Fln nts: TGGAAGCCGGATAGCTTTTACAATAAGATCAAATCTAATAAAGATCGAGGTCAACATACTCTTTGTTTATTGGATATTAAAGTGAAAGAACAATCGGAAGAAAATCTTTTGCGTCGCAAGAAAATATATGAACCTCCAAGATTTATGTCCGTGCAGGTTTGTATTGATCAATTACTTGAAATTGAAGCAATTCGCCAAGAAAATGTGTACAATGAAAATACAAAATGTATTGGATTAGCCCGAATTGGTCAACCCA

Fln Alignment:

HLKU4M004JBCM8___WKPDSFYNKIKSNKDRGQHTLCLLDIKVKEQSEENLLRRKKIYEPPRFMSVQVCIDQLLEIEAIRQENVYNENTKCIGLARIG
D5ADY9________________WRPDSFYDKIKANRQLGLHTLCLLDIRVKEPSIESLCRGKKDYEPPKFMTINTAIEQLLEIEETHAESAYNEDTSCVGLVRLG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain