SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene155863

Length: 465 nt

UniGene Fasta

>sp_v3.0_unigene155863
ACGCTTCGACTATCGACAACGACAACTTTCTCGACGTTCGTCACCAATCGCCAAGATGACGAAGATCAACAGCGCCCTCCACTCCTCAAGGAGAAAGTCGCGCAAGGCCCACTACGATGCCCCTTCCAGCGTTAGACGTACGATCATGAGTGCGCCATTGAGCAAGGAGCTCCGAGACAAATACAACGTCCGCTCCATCTCAATCCGAAAAGACGACGAAGTTCTGGTCGTACGAGGGTCCAACAAGGGCCGCGAAGGCAAGATCACCTCTGTCTACCGTCTCAAGTACATTGTACACATCGAGCGTGTCGTCAAGGAGAAATCATCTGGTCAATCCGTCCCCATTGGCGTTCACCCATCGAAGGTCGTCATCACGAAGTTGAAGCTCGACAAGGACCGTGAGAGCATACTGGAGCGCATCAAGGCTGGTCGCGAGATCAAGGAGAAGCTGAAGGAGAAGGCATA

Ace file of the UniGene sp_v3.0_unigene155863

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L26 n=2 Tax=Sclerotiniaceae RepID=A6RXB8_BOTFB	-	-	0.0	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	60S ribosomal protein L26	-	-	6.124e-11	-

Source	Gene names
Sma3	At3g49910; At5g67510; CHLREDRAFT_136811; F3A4.4; GSVIVT00012534001; GSVIVT00019661001; GSVIVT00038278001; K9I9.7; LOC_Os11g05370; LOC_Os12g05430; MICPUCDRAFT_30848; MICPUN_91267; OSTLU_8655; Os01g0140500; Os11g0151300; Os12g0150100; OsI_00322; OsI_00325;

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	large ribosomal subunit	GO:0015934	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L26/L24P, eukaryotic/archaeal	IPR005756	-	-
Sma3	KOW	IPR005824	-	-
Sma3	Ribosomal protein L24/L26, conserved site	IPR005825	-	-
Sma3	Ribosomal protein L24, SH3-like	IPR014723	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G67510.1	Translation protein SH3-like family protein chr5:26937970-26938410 REVERSE LENGTH=146	61%
RefSeq	Arabidopsis thaliana	NP_201552.1	60S ribosomal protein L26-2 [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002304321.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXB2

Fln msg: STOP codon was not found. Distance to subject end: 11 aas,

Fln protein: MTKINSALHSSRRKSRKAHYDAPSSVRRTIMSAPLSKELRDKYNVRSISIRKDDEVLVVRGSNKGREGKITSVYRLKYIVHIERVVKEKSSGQSVPIGVHPSKVVITKLKLDKDRESILERIKAGREIKEKLKEKA

Protein Length: 137

Fln nts: ACGCTTCGACTATCGACAACGACAACTTTCTCGACGTTCGTCACCAATCGCCAAG_-_ATGACGAAGATCAACAGCGCCCTCCACTCCTCAAGGAGAAAGTCGCGCAAGGCCCACTACGATGCCCCTTCCAGCGTTAGACGTACGATCATGAGTGCGCCATTGAGCAAGGAGCTCCGAGACAAATACAACGTCCGCTCCATCTCAATCCGAAAAGACGACGAAGTTCTGGTCGTACGAGGGTCCAACAAGGGCCGCGAAGGCAAGATCACCTCTGTCTACCGTCTCAAGTACATTGTACACATCGAGCGTGTCGTCAAGGAGAAATCATCTGGTCAATCCGTCCCCATTGGCGTTCACCCATCGAAGGTCGTCATCACGAAGTTGAAGCTCGACAAGGACCGTGAGAGCATACTGGAGCGCATCAAGGCTGGTCGCGAGATCAAGGAGAAGCTGAAGGAGAAGGCATA

Fln Alignment:

HLKU4M004I7X00___KINSALHSSRRKSRKAHYDAPSSVRRTIMSAPLSKELRDKYNVRSISIRKDDEVLVVRGSNKGREGKITSVYRLKYIVHIERVVKEKSSGQSVPIGVHPSKVVITKLKLDKDRESILERIKAGR
A9NXB2________________KYNPRVSSSRRKSRKAHFTAPSSVRRILMSAPLNPDLRNKYNVRSIPIRKDDEVQVVRGSFKGREGKVVQVYRKKWVIHVERITRDKVNGSTVNVGVHPSKVIVTKLKLDKDRKSLLERKGKGR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain