SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene155687

Length: 290 nt

UniGene Fasta

>sp_v3.0_unigene155687
GCCAGACATGGAAGGTCGCACCCACGATTCTCCAGATCCACGCGCGCGCGATGAGCTGCGAGCGAGGCATTCGCTTTGTAGCTTCTCTCGCGTCTTTGCCCGAACACCACCGGTGCTGATCTCAGAAGCGTCTGCACCGAGGCTGGAATGTTCGCCATCCGCGCTCGTCGTAAGACTGTCACAGAACGCGATCTCCTTGATGCCATCAACAAGGTTATTGCTAAGGGCTCGAGGTTCTCGGCGACTCCCAAGTATATGGCCTACAACATCTAAACCAAATTCTCGACTTC

Ace file of the UniGene sp_v3.0_unigene155687

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	26S protease regulatory subunit, putative n=1 Tax=Ricinus communis RepID=B9T505_RICCO	-	-	6.0e-22	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%

Source	Gene names
Sma3	26S proteasome subunit; At1g53750; CHLREDRAFT_184001; F22G10.2; GSVIVT00016352001; GSVIVT00033984001; MICPUCDRAFT_55324; MICPUN_51697; OSTLU_29121; Os02g0784700; Os06g0192600; OsI_09197; OsI_21990; OsJ_08636; OsJ_20424; Ot01g04855; PHATR_28219; PHYPADRAFT

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	protein catabolic process	GO:0030163	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	26S proteasome subunit P45	IPR005937	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G53750.1	RPT1A regulatory particle triple-A 1A chr1:20065921-20068324 REVERSE LENGTH=426	2.0e-25	78%
RefSeq	Arabidopsis thaliana	NP_175778.1	regulatory particle triple-A 1A [Arabidopsis thaliana]	3.0e-25	78%
RefSeq	Populus trichocarpa	XP_002334015.1	predicted protein, partial [Populus trichocarpa]	6.0e-26	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRI8

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 91 - 425

Fln protein: ARHGRSHPRFSRSTRAR*AASEAFAL*LLSRLCPNTTGADLRSVCTEAGMFAIRARRKTVTERDLLDAINKVIAKGSRFSATPKYMAYNI*

Protein Length: 92

Fln nts: GCCAGACATGGAAGGTCGCACCCACGATTCTCCAGATCCACGCGCGCGCGATGAGCTGCGAGCGAGGCATTCGCTTTGTAGCTTCTCTCGCGTCTTTGCCCGAACACCACCGGTGCTGATCTCAGAAGCGTCTGCACCGAGGCTGGAATGTTCGCCATCCGCGCTCGTCGTAAGACTGTCACAGAACGCGATCTCCTTGATGCCATCAACAAGGTTATTGCTAAGGGCTCGAGGTTCTCGGCGACTCCCAAGTATATGGCCTACAACATCTAA___ACCAAATTCTCGACTTC

Fln Alignment:

HLKU4M004H92XP___CPNTTGADLRSVCTEAGMFAIRARRKTVTERDLLDAINKVIAKGSRFSATPKYMAYN
B8LRI8________________CPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLEAVNKVIKGYQKFSATPKYMVYN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain