SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene155631

Length: 371 nt

UniGene Fasta

>sp_v3.0_unigene155631
CGTCTTCAGTTCTTCTTCAATCTGCTCGGCCTTCCTTCCGAAAGACATAAGAATTAATCATGCCTGCCTACCACTCGCAGTACAACAAGGAACCTGACACGCGCGTCATGTGCGGCATGGCCATCCTGCCCATCAAGACTAAGTATAAGGGTCCCGCTCCCCGCTACACTGGCCCTGCCGACCAGCCCGACATCATCGATGAAGCCATCAGCTTCTTCAAGGCCAACGTTCTTTTCAGGAACTACGAAGTCAAGGGCCCCGCCGATCGTGTCCTGATCTACCTCACGCTGTACATCTCCCAGGCCATCAACCAGATGATCAACCAGAGCAAGGGCGGCGCTGGCAAGAATATGTTCAACCTTGCCATCCAG

Ace file of the UniGene sp_v3.0_unigene155631

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Actin-related protein 2/3 complex subunit 3 n=3 Tax=Tetrapoda RepID=A1DPK7_XENLA	-	-	2.0e-22	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G60430.1	ARPC3 actin-related protein C3 chr1:22264797-22265682 REVERSE LENGTH=174	3.0e-22	48%
RefSeq	Arabidopsis thaliana	NP_564757.1	actin-related protein C3 [Arabidopsis thaliana]	4.0e-22	48%
RefSeq	Populus trichocarpa	XP_002324615.1	predicted protein [Populus trichocarpa]	1.0e-22	48%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB19

Fln msg: Distance to subject end: 73 aas, your sequence is shorter than subject: 104 - 174

Fln protein: MPAYHSQYNKEPDTRVMCGMAILPIKTKYKGPAPRYTGPADQPDIIDEAISFFKANVLFRNYEVKGPADRVLIYLTLYISQAINQMINQSKGGAGKNMFNLAIQ

Protein Length: 105

Fln nts: CGTCTTCAGTTCTTCTTCAATCTGCTCGGCCTTCCTTCCGAAAGACATAAGAATTAATC_-_ATGCCTGCCTACCACTCGCAGTACAACAAGGAACCTGACACGCGCGTCATGTGCGGCATGGCCATCCTGCCCATCAAGACTAAGTATAAGGGTCCCGCTCCCCGCTACACTGGCCCTGCCGACCAGCCCGACATCATCGATGAAGCCATCAGCTTCTTCAAGGCCAACGTTCTTTTCAGGAACTACGAAGTCAAGGGCCCCGCCGATCGTGTCCTGATCTACCTCACGCTGTACATCTCCCAGGCCATCAACCAGATGATCAACCAGAGCAAGGGCGGCGCTGGCAAGAATATGTTCAACCTTGCCATCCAG

Fln Alignment:

HLKU4M004IXDXE___YHSQYNKEPDTRVMCGMAILPIKTKYKGPAPRYTGPADQPDIIDEAISFFKANVLFRNYEVKGPADRVLIYLTLYISQAINQM
D5AB19________________YHSSFVNEEGITQACGCPLLPLKSHIRGPAP--ISDPGKTDIIDEAITFFRANVFFRKFEVKSPADKLLIYSTLFINMALKRL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain