SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene155617

Length: 509 nt

UniGene Fasta

>sp_v3.0_unigene155617
CCAAACGCCATTCACTCACGTGCTGGTGTCATCAAGCGCTTAGAAGCCAAGCGTAAGGGTCGCCACACCGGTTATGGTAAGCGTAAGGGTACCCGTGAAGCCCGTTTCCCATCAAAAATCATTTGGATTCGTCGCATGCGTGTATTACGTCGCTTATTACGCAAATACCGTGAAGCTGACAAGATCGACAAGCACTTATACCACTCAATGTACAGTGCATGCAAGGGTAACGCCTTCAAGAACAAGCGTGTATTAATGGAACACATCTTCAACGCTAAGAGCGAACAAAGCCGTGAAAAGGCATTACAAGACCAAGCCGAAGCTCGTCGCAGCAAGGCTCGTGGCAAGAAGAACAAGGGTGATGACAAGGCTGCCGCTCAAGAATAAATGACGTTGACCTAACTCTGCTTGTTGTTCGTATTGTTATATTACATTGACACCATTTCTCTCTAACCGTTTGTAGTACATCTCCTATGGGACCGAATCCGGTGGTTCCTAATCTCCACATC

Ace file of the UniGene sp_v3.0_unigene155617

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L19 n=2 Tax=Micromonas RepID=C1FE66_MICSR	-	-	1.0e-30	57%
FL-Next	sp=Ribosomal protein L19; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Sma3	Ribosomal protein L19	-	-	0.0	-

Source	Gene names
Sma3	At1g02780; At3g16780; At4g02230; CHLREDRAFT_195590; EMB2386; F22D16.23; GSVIVT00017864001; GSVIVT00028043001; GSVIVT00033052001; LOC_Os03g21940; LOC_Os03g38260; MGL6.25; MICPUCDRAFT_49436; MICPUN_112659; OSJNBa0083K01.10; OSJNBb0016P23.5; OSTLU_119482; Os

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L19/L19e	IPR000196	-	-
Sma3	Ribosomal protein L19/L19e, domain 1	IPR015972	-	-
Sma3	Ribosomal protein L19/L19e, domain 3	IPR015974	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G16780.1	Ribosomal protein L19e family protein chr3:5708982-5710249 FORWARD LENGTH=209	6.0e-36	67%
RefSeq	Arabidopsis thaliana	NP_188300.1	60S ribosomal protein L19-2 [Arabidopsis thaliana]	7.0e-36	67%
RefSeq	Populus trichocarpa	XP_002329697.1	predicted protein [Populus trichocarpa]	2.0e-37	68%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTG5

Fln msg: your sequence is shorter than subject: 129 - 177

Fln protein: PNAIHSRAGVIKRLEAKRKGRHTGYGKRKGTREARFPSKIIWIRRMRVLRRLLRKYREADKIDKHLYHSMYSACKGNAFKNKRVLMEHIFNAKSEQSREKALQDQAEARRSKARGKKNKGDDKAAAQE*

Protein Length: 130

Fln nts: CCAAACGCCATTCACTCACGTGCTGGTGTCATCAAGCGCTTAGAAGCCAAGCGTAAGGGTCGCCACACCGGTTATGGTAAGCGTAAGGGTACCCGTGAAGCCCGTTTCCCATCAAAAATCATTTGGATTCGTCGCATGCGTGTATTACGTCGCTTATTACGCAAATACCGTGAAGCTGACAAGATCGACAAGCACTTATACCACTCAATGTACAGTGCATGCAAGGGTAACGCCTTCAAGAACAAGCGTGTATTAATGGAACACATCTTCAACGCTAAGAGCGAACAAAGCCGTGAAAAGGCATTACAAGACCAAGCCGAAGCTCGTCGCAGCAAGGCTCGTGGCAAGAAGAACAAGGGTGATGACAAGGCTGCCGCTCAAGAATAA___ATGACGTTGACCTAACTCTGCTTGTTGTTCGTATTGTTATATTACATTGACACCATTTCTCTCTAACCGTTTGTAGTACATCTCCTATGGGACCGAATCCGGTGGTTCCTAATCTCCACATC

Fln Alignment:

HLKU4M004H4GKP___PNAIHSRAGVIKRLEAKRKGRHTGYGKRKGTREARFPSKIIWIXXXXXXXXXXXXXXEADKIDKHLYHSMYSACKGNAFKNKRVLMEHIFNAKSEQSREKALQDQAEARRS
A9NTG5________________PMKIHSRARARRALEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain