SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene155582

Length: 549 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene155582
GACTTCAACGCACAAGGCAAAATCGGCGCGACTCAGCACTGACCGCTGAGGGTCACAAGTATGCGAAGAAGCTGTCGGACTGGATTTCTCAGCAACCTGAGGTCCAAGAAACCCCATCAAAGAAAATTCCTGTGTGGTGCAGCTGGCTACAGCGGACGCTTACAACTGCGGCGGCCATCGAATGCAGTTTGGAGCGAGTCCCTTGGCGCGCTCTGAACGAGATCGAAAGTGGTACCTGCGATGGCATGACATATGAAGAGATCGAAAAGAAATTCCCTGACGAATTTGCGGCGCGCGCGAAGGACAAGTTACGCTACCGATATCCACGAGGCGAATCATATCTTGACGTCATTCAGCGCATCGAATCTGTCCTATTCGAACTAGAGCGGGTTACCGGTCCAATTCTCGTGGTTGGCCATCAAGCTGTTCTTCGCTGCCTAATTTCGTATTTCCATGATGTCCCATCGGAGAGGATTCCCCACATCGATGTCCCGTTGCATACTGTCATCCGGTTAACGCCTAGAGCCTACGGCTGCGATGTTGATTACT

Ace file of the UniGene sp_v3.0_unigene155582 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Fructose-2,6-bisphosphate 2-phosphatase n=1 Tax=Ectocarpus siliculosus RepID=D8LUB4_ECTSI	-	-	0.0	54%
FL-Next	sp=6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	52%
Sma3	Fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase	-	-	1.048e-18	-

Source	ECs	Term	Type	e value	Identity
Sma3	6-phosphofructo-2-kinase.	EC:2.7.1.105	-	2.793e-18	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fructose and mannose metabolism	00051		2.793e-18	%
Sma3	Fructose-2,6-bisphosphate 2-phosphatase.	EC:3.1.3.46	-	2.793e-18	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fructose and mannose metabolism	00051		2.793e-18	%

Source	Gene names
Sma3	At1g07110; CHLREDRAFT_121054; CHLREDRAFT_71915; F10K1.19; F2KP; F2KP1; GSVIVT00024062001; LOC_Os03g18310; MICPUN_78129; OSJNBa0027N19.4; OSJNBb0099P06.14; Os03g0294200; Os05g0164100; OsI_18583; OsJ_10467; OsJ_17237; PF2K1; PHATRDRAFT_17495; PHYPADRAFT_146

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	6-phosphofructo-2-kinase activity	GO:0003873	Molecular Function	-
Sma3	fructose-2,6-bisphosphate 2-phosphatase activity	GO:0004331	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	carbohydrate binding	GO:0030246	Molecular Function	-
Sma3	fructose 2,6-bisphosphate metabolic process	GO:0006003	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Carbohydrate binding module family 20	IPR002044	-	-
Sma3	Fructose-2,6-bisphosphatase	IPR003094	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-
Sma3	6-phosphofructo-2-kinase	IPR013079	-	-
Sma3	Immunoglobulin-like fold	IPR013783	-	-
Sma3	Bifunctional 6-phosphofructo-2-kinase/fructose-2, 6-bisphosphate 2-phosphatase	IPR016260	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G07110.1	F2KP, ATF2KP, FKFBP fructose-2,6-bisphosphatase chr1:2178363-2183980 REVERSE LENGTH=744	52%
RefSeq	Arabidopsis thaliana	NP_172191.1	fructose-2,6-bisphosphatase [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002313981.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q9MB58

Fln msg: STOP codon was not found. Distance to subject end: 5 aas, your sequence is shorter than subject: 182 - 744

Fln protein: LQRTRQNRRDSALTAEGHKYAKKLSDWISQQPEVQETPSKKIPVWCSWLQRTLTTAAAIECSLERVPWRALNEIESGTCDGMTYEEIEKKFPDEFAARAKDKLRYRYPRGESYLDVIQRIESVLFELERVTGPILVVGHQAVLRCLISYFHDVPSERIPHIDVPLHTVIRLTPRAYGCDVDY

Protein Length: 183

Fln nts: GACTTCAACGCACAAGGCAAAATCGGCGCGACTCAGCACTGACCGCTGAGGGTCACAAGTATGCGAAGAAGCTGTCGGACTGGATTTCTCAGCAACCTGAGGTCCAAGAAACCCCATCAAAGAAAATTCCTGTGTGGTGCAGCTGGCTACAGCGGACGCTTACAACTGCGGCGGCCATCGAATGCAGTTTGGAGCGAGTCCCTTGGCGCGCTCTGAACGAGATCGAAAGTGGTACCTGCGATGGCATGACATATGAAGAGATCGAAAAGAAATTCCCTGACGAATTTGCGGCGCGCGCGAAGGACAAGTTACGCTACCGATATCCACGAGGCGAATCATATCTTGACGTCATTCAGCGCATCGAATCTGTCCTATTCGAACTAGAGCGGGTTACCGGTCCAATTCTCGTGGTTGGCCATCAAGCTGTTCTTCGCTGCCTAATTTCGTATTTCCATGATGTCCCATCGGAGAGGATTCCCCACATCGATGTCCCGTTGCATACTGTCATCCGGTTAACGCCTAGAGCCTACGGCTGCGATGTTGATTACT

Fln Alignment:

HLKU4M004IETIG___DSALTAEGHKYAKKLSDWISQQPEVQETPSKKIPVWCSWLQRTLTTAAAIECSLERVPWRALNEIESGTCDGMTYEEIEKKFPDEFAARAKDKLRYRYPRGESYLDVIQRIESVLFELERVTGPILVVGHQAVLRCLISYFHDVPSERIPHIDVPLHTVIRL
Q9MB58________________DSVISDSGKLYAKKLASFVEKRLKSEKAAS----IWTSTLQRTNLTASSI-VGFPKVQWRALDEINAGVCDGMTYEEVKKNMPEEYESRKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRALYAYFADRPLKEIPQIEMPLHTIIEI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain