SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene155553

Length: 402 nt

UniGene Fasta

>sp_v3.0_unigene155553
CTGTGTTTGGATCTGGCACGAAGAAGGTCGCTGGATGTATGGTCACCGACGGCCGGCTACGAAAGGGCTCACTAGCTGTGGTCATGCGTGGCAAGCGACAAGTATTTGAGGGTCAGCTGAACTCCTTGCGGCGAGTGAAGGAGAACGTGAATGAGGTGCAGTACGGCAACGAGTGCGGTGTAGGCGTCACTGATTTCATTGATTGGAGACAGGGTGACAGGGTAGAGGCCTACGACGTTCAGGTGAAGCGGCAAACATTGGAAGAAGCCAGTGGGCGAGAAGTTTTTGGTTCTTACATGGCATCTGTTGACGACCTTGATTACGACTAAGCTGGGCTGCCACTGCCAACTGAGAATGAGGTCAATCAAGATTTTGATGATTGTCTGTGATGCATTTTGATTC

Ace file of the UniGene sp_v3.0_unigene155553

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Translation initiation factor IF-2 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9S9Z9_PHYPA	-	-	2.0e-20	55%
FL-Next	sp=Translation initiation factor IF-2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	51%
Sma3	Translation initiation factor IF-2	-	-	3.07e-11	-

Source	Gene names
Sma3	At1g17220; F20D23.8; Os05g0575300; OsI_21094; OsJ_30772; PHYPADRAFT_182684; POPTRDRAFT_815829; RCOM_0477800;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	translational initiation	GO:0006413	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Translation initiation factor aIF-2, bacterial-like	IPR000178	-	-
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	Translation initiation factor IF-2, N-terminal	IPR006847	-	-
Sma3	Translation initiation factor IF- 2	IPR015760	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G17220.1	FUG1 Translation initiation factor 2, small GTP-binding protein chr1:5885383-5890165 FORWARD LENGTH=1026	8.0e-22	51%
RefSeq	Arabidopsis thaliana	NP_173165.1	translation initiation factor IF-2 [Arabidopsis thaliana]	1.0e-21	51%
RefSeq	Populus trichocarpa	XP_002300479.1	predicted protein [Populus trichocarpa]	7.0e-24	53%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9SHI1

Fln msg: your sequence is shorter than subject: 109 - 1026

Fln protein: VFGSGTKKVAGCMVTDGRLRKGSLAVVMRGKRQVFEGQLNSLRRVKENVNEVQYGNECGVGVTDFIDWRQGDRVEAYDVQVKRQTLEEASGREVFGSYMASVDDLDYD*

Protein Length: 110

Fln nts: CTGTGTTTGGATCTGGCACGAAGAAGGTCGCTGGATGTATGGTCACCGACGGCCGGCTACGAAAGGGCTCACTAGCTGTGGTCATGCGTGGCAAGCGACAAGTATTTGAGGGTCAGCTGAACTCCTTGCGGCGAGTGAAGGAGAACGTGAATGAGGTGCAGTACGGCAACGAGTGCGGTGTAGGCGTCACTGATTTCATTGATTGGAGACAGGGTGACAGGGTAGAGGCCTACGACGTTCAGGTGAAGCGGCAAACATTGGAAGAAGCCAGTGGGCGAGAAGTTTTTGGTTCTTACATGGCATCTGTTGACGACCTTGATTACGACTAA___GCTGGGCTGCCACTGCCAACTGAGAATGAGGTCAATCAAGATTTTGATGATTGTCTGTGATGCATTTTGATTC

Fln Alignment:

HLKU4M004IUBZ5___FGSGTKKVAGCMVTDGRLRKGSLAVVMRGKRQVFEGQLNSLRRVKENVNEVQYGNECGVGVTDFIDWRQGDRVEAYDVQVKRQTLEEAS
Q9SHI1________________FSSGSGRVAGCMVNEGKFVKDCGIRVVRKGKTVHVGVLDSLKRVKENVKEVSAGLECGIGMDDYDDWIEGDIIEAFNAVQKRRTLEEAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain