SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene155551

Length: 304 nt

UniGene Fasta

>sp_v3.0_unigene155551
ACTCTATTGGTGTGTCTTCCACCACCTACTGCACCAAGTGCAAGGCTATTGCTGATTCTGGAACATCTCTTCTTGCTGGTCCTACTGAGATCGTTAAGAAGATTAACGATCAGATTGGTGCTACCGGTATCTTTACTGGCGAATGTGATATGATCATCGAGCAATACGGTGATGAAATCGTAAAATGGTTGGAATCTGGTGTTACACCCGCTGAGGTTTGCAGCAGCATTGGTCTCTGCCCAGGAGCCCTCTGCAACACTTGCGACACTCTTATCTACTACGCCCAAATGTTGTTGGCCAACAT

Ace file of the UniGene sp_v3.0_unigene155551

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os01g0663400 protein n=2 Tax=Oryza sativa RepID=Q0JKM8_ORYSJ	-	-	4.0e-18	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	Aspartic proteinase, putative	-	-	1.273e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:3.4.23.4-	-	2.672e-07	-

Source	Gene names
Sma3	GSVIVT00006869001; GSVIVT00022513001; MtrDRAFT_AC157894g38v2; NaAP1; NaAP3; PHYPADRAFT_214296; PHYPADRAFT_234014; POPTRDRAFT_833956; RCOM_0903730; RCOM_1436680; VITISV_037763; WAP2;

Source	GOs	Term	Type	Identity
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Actinin-type, actin-binding, conserved site	IPR001589	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Saposin-like type B, 1	IPR007856	-	-
Sma3	Saposin-like type B, 2	IPR008138	-	-
Sma3	Saposin B	IPR008139	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Saposin-like	IPR011001	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G11910.1	APA1, ATAPA1 aspartic proteinase A1 chr1:4017119-4019874 REVERSE LENGTH=506	3.0e-19	50%
RefSeq	Arabidopsis thaliana	NP_172655.1	aspartic proteinase A1 [Arabidopsis thaliana]	4.0e-19	50%
RefSeq	Populus trichocarpa	XP_002317126.1	predicted protein [Populus trichocarpa]	2.0e-20	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRP2

Fln msg: Distance to subject end: 97 aas, your sequence is shorter than subject: 100 - 471

Fln protein: SIGVSSTTYCTKCKAIADSGTSLLAGPTEIVKKINDQIGATGIFTGECDMIIEQYGDEIVKWLESGVTPAEVCSSIGLCPGALCNTCDTLIYYAQMLLAN

Protein Length: 101

Fln nts: ACTCTATTGGTGTGTCTTCCACCACCTACTGCACCAAGTGCAAGGCTATTGCTGATTCTGGAACATCTCTTCTTGCTGGTCCTACTGAGATCGTTAAGAAGATTAACGATCAGATTGGTGCTACCGGTATCTTTACTGGCGAATGTGATATGATCATCGAGCAATACGGTGATGAAATCGTAAAATGGTTGGAATCTGGTGTTACACCCGCTGAGGTTTGCAGCAGCATTGGTCTCTGCCCAGGAGCCCTCTGCAACACTTGCGACACTCTTATCTACTACGCCCAAATGTTGTTGGCCAACAT

Fln Alignment:

HLKU4M004JO0AU___IGVSSTTYCTK-CKAIADSGTSLLAGPTEIVKKINDQIGATGIFTGECDMIIEQYGDEIVKWLESGVTPAEVCSSIGLC
B8LRP2________________IGGQSTGFCSGGCAAIVDSGTSLLAGPSGIVAQINEAIGASGLASQECKSVVSQYGDLIMELLMAQTNPQKVCSQIGLC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain