SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene155540

Length: 571 nt

UniGene Fasta

>sp_v3.0_unigene155540
GGTTTCGACGGAGAACATCACACAGAACTGGTACCGCGGCAATGATCGTTCCATGCTCATGAGCAACACGCTGTTCCGTGTCGGTGGCAGCGCCACGCTGCTGTCGAACCGTCGCGCCGATGCGAGCCGTGCCAAATACCGTCTTTTGCACAGCGTGCGCACGCACATGGGCGCCGACGATGCCTCTTATGGGGCGGTGTTCCAAGACTGTGACGCCGACGGCATCATCGGTGTACGGCTCGACAAACAACTCATGAAAGTGGCCGGCGAAGCGTTGAAACGCAACATCACAACTTTGGGCCCGTTGATCCTCCCCGTCTCCGAACAGCTTCGGTTCTTATGGAACGTGTTTCAGCGCAAAGTGCGCAAACAGAAAGGTCTGAAACCGTACGTGCCCAACTTCACACGCGCGGTCGACCATTTCTGCATTCATGCCGGCGGGCGTGCCGTCATCGAAGCCATTCAAGAAGCTCTTGCACTGCCGCCCAATAAAGTGGCCGCGTCGAAAGCCGTCCTGCACCGGTACGGCAACACATCGTCGTCGTCCATCTTCTACGAGTTGGCATGGCTC

Ace file of the UniGene sp_v3.0_unigene155540

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	3-ketoacyl-CoA synthase n=1 Tax=Hemerocallis hybrid cultivar RepID=O81658_HEMSP	-	-	0.0	62%
FL-Next	sp=3-ketoacyl-CoA synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Sma3	Acyltransferase, putative	-	-	1.912e-33	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transferases, Acyltransferases, Transferring groups other than amino-acyl groups.	EC:2.3.1.-	-	1.009e-36	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fatty acid biosynthesis	00061		1.009e-36	%
Sma3	Tetracycline biosynthesis	00253		1.009e-36	%
Sma3	Lysine degradation	00310		1.009e-36	%
Sma3	Arginine and proline metabolism	00330		1.009e-36	%
Sma3	Histidine metabolism	00340		1.009e-36	%
Sma3	Tyrosine metabolism	00350		1.009e-36	%
Sma3	Benzoate degradation	00362		1.009e-36	%
Sma3	Lipopolysaccharide biosynthesis	00540		1.009e-36	%
Sma3	Glycerophospholipid metabolism	00564		1.009e-36	%
Sma3	Ether lipid metabolism	00565		1.009e-36	%
Sma3	Glycosphingolipid biosynthesis - ganglio series	00604		1.009e-36	%
Sma3	Toluene degradation	00623		1.009e-36	%
Sma3	Naphthalene degradation	00626		1.009e-36	%
Sma3	Aminobenzoate degradation	00627		1.009e-36	%
Sma3	Ethylbenzene degradation	00642		1.009e-36	%
Sma3	Butanoate metabolism	00650		1.009e-36	%
Sma3	Methane metabolism	00680		1.009e-36	%
Sma3	Limonene and pinene degradation	00903		1.009e-36	%
Sma3	Diterpenoid biosynthesis	00904		1.009e-36	%
Sma3	Carotenoid biosynthesis	00906		1.009e-36	%
Sma3	Anthocyanin biosynthesis	00942		1.009e-36	%
Sma3	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945		1.009e-36	%
Sma3	Isoquinoline alkaloid biosynthesis	00950		1.009e-36	%
Sma3	Tropane, piperidine and pyridine alkaloid biosynthesis	00960		1.009e-36	%
Sma3	Betalain biosynthesis	00965		1.009e-36	%
Sma3	Biosynthesis of unsaturated fatty acids	01040		1.009e-36	%
Sma3	Biosynthesis of type II polyketide backbone	01056		1.009e-36	%
Sma3	Biosynthesis of terpenoids and steroids	01062		1.009e-36	%
Sma3	Metabolic pathways	01100		1.009e-36	%
Sma3	Biosynthesis of secondary metabolites	01110		1.009e-36	%
Sma3	Icosanoyl-CoA synthase.	EC:2.3.1.119	-	2.458e-12	-

Source	Gene names
Sma3	AT1G01120; At1g01120; At1g04220; At1g07720; At1g19440; At1g25450; At1g68530; At1g71160; At2g15090; At2g16280; At2g26250; At2g26640; At2g46720; At3g10280; At4g34250; At4g34510; At4g34520; At5g43760; At5g49070; CER6; CER60; CHLREDRAFT_138664; CM0216.300.nc;

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3		GO:0008415	Molecular Function	-
Sma3	fatty acid elongase activity	GO:0009922	Molecular Function	-
Sma3	transferase activity, transferring acyl groups other than amino-acyl groups	GO:0016747	Molecular Function	-
Sma3	icosanoyl-CoA synthase activity	GO:0033807	Molecular Function	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-
Sma3	response to osmotic stress	GO:0006970	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to light stimulus	GO:0009416	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	wax biosynthetic process	GO:0010025	Biological Process	-
Sma3	suberin biosynthetic process	GO:0010345	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Chalcone/stilbene synthase, C-terminal	IPR012328	-	-
Sma3	Very-long-chain 3-ketoacyl-CoA synthase	IPR012392	-	-
Sma3	FAE1/Type III polyketide synthase-like protein	IPR013601	-	-
Sma3	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal	IPR013747	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-
Sma3	Gonadotropin, beta subunit, conserved site	IPR018245	-	-
Sma3	Ribosomal protein S10, conserved site	IPR018268	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G43760.1	KCS20 3-ketoacyl-CoA synthase 20 chr5:17585903-17588486 FORWARD LENGTH=529	59%
RefSeq	Arabidopsis thaliana	NP_199189.1	3-ketoacyl-CoA synthase 19 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002313793.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AD26

Fln msg: Distance to subject end: 54 aas, your sequence is shorter than subject: 190 - 486

Fln protein: VSTENITQNWYRGNDRSMLMSNTLFRVGGSATLLSNRRADASRAKYRLLHSVRTHMGADDASYGAVFQDCDADGIIGVRLDKQLMKVAGEALKRNITTLGPLILPVSEQLRFLWNVFQRKVRKQKGLKPYVPNFTRAVDHFCIHAGGRAVIEAIQEALALPPNKVAASKAVLHRYGNTSSSSIFYELAWL

Protein Length: 191

Fln nts: GGTTTCGACGGAGAACATCACACAGAACTGGTACCGCGGCAATGATCGTTCCATGCTCATGAGCAACACGCTGTTCCGTGTCGGTGGCAGCGCCACGCTGCTGTCGAACCGTCGCGCCGATGCGAGCCGTGCCAAATACCGTCTTTTGCACAGCGTGCGCACGCACATGGGCGCCGACGATGCCTCTTATGGGGCGGTGTTCCAAGACTGTGACGCCGACGGCATCATCGGTGTACGGCTCGACAAACAACTCATGAAAGTGGCCGGCGAAGCGTTGAAACGCAACATCACAACTTTGGGCCCGTTGATCCTCCCCGTCTCCGAACAGCTTCGGTTCTTATGGAACGTGTTTCAGCGCAAAGTGCGCAAACAGAAAGGTCTGAAACCGTACGTGCCCAACTTCACACGCGCGGTCGACCATTTCTGCATTCATGCCGGCGGGCGTGCCGTCATCGAAGCCATTCAAGAAGCTCTTGCACTGCCGCCCAATAAAGTGGCCGCGTCGAAAGCCGTCCTGCACCGGTACGGCAACACATCGTCGTCGTCCATCTTCTACGAGTTGGCATGGCTC

Fln Alignment:

HLKU4M004JYUP1___VSTENITQNWYRGNDRSMLMSNTLFRVGGSATLLSNRRADASRAKYRLLHSVRTHMGADDASYGAVFQDCDADGIIGVRLDKQLMKVAGEALKRNITTLGPLILPVSEQLRFLWNVFQRKVRKQKGLKPYVPNFTRAVDHFCIHAGGRAVIEAIQEALALPPNKVAASKAVLHRYGNTSSSSIFYELAW
D5AD26________________LSTENITLNWYTGNDRSMLLPNCLFRMGGSAILLSNRRTERRRSRYQLKHIVRTHKGAEDESYQCVYQGEDDNNEKGLSISRDLMSVAGHALKANITTLGPLVLPLSEQLLFLWALFCRKVLKMRDVRPYIPNFKLAFDHFFIHAGGRGVLDGVEKNLGLTKYHMEPSRMTLHRFGNTSSSSLWYELAY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain