SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene155517

Length: 454 nt

UniGene Fasta

>sp_v3.0_unigene155517
CCTGCCATTTTAATGGATTTAGAACCTGGTACCATGGATTCAGTTCGCGCTGGTCCTTTCGGTCAAATCTTCCGCCCTGATAACTTCGTCTTCGGTCAATCAGGTGCTGGTAACAACTGGGCCAAGGGTCACTACACTGAAGGTGCTGAATTAATCGATTCAGTATTAGATGTCGTCCGCAAGGAAGCTGAATCATGTGATTGTTTACAAGGTTTCCAAATCACTCACTCATTAGGTGGTGGTACAGGTTCAGGTATGGGTACTTTATTAATCTCAAAGATTCGTGAAGAATACCCAGATCGTATGATGTGTACCTTCTCAGTCTTCCCATCACCAAAGGTATCAGATACAGTCGTCGAACCATACAACGCCACATTATCAGTCCATCAATTAGTCGAAAACGCTGATGAAGTAATGGTCATTGATAACGAAGCTTTATACGATATCTGTTTCC

Ace file of the UniGene sp_v3.0_unigene155517

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tubulin beta chain n=1 Tax=Chlorella variabilis RepID=E1ZJM1_9CHLO	-	-	0.0	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	Tubulin beta-1 chain	-	-	3.567e-07	-

Source	Gene names
Sma3	LOC_Os03g56810; OSTB-50; Os02g0167300; Os03g0780600; OsI_05997; OsI_13743; OsJ_05524; POPTRDRAFT_582598; R2242; RCOM_1336530; TUB1; TUB5; TUB7; TUB8; TUBB1; TUBB2; TUBB4; TUBB5; TUBB7; btub; btub1; tub5;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tubulin	IPR000217	-	-
Sma3	Beta tubulin	IPR002453	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G20890.1	TUB9 tubulin beta-9 chain chr4:11182218-11183840 FORWARD LENGTH=444	94%
RefSeq	Arabidopsis thaliana	NP_193821.1	tubulin beta-9 chain [Arabidopsis thaliana]	94%
RefSeq	Populus trichocarpa	XP_002330612.1	tubulin, beta chain [Populus trichocarpa]	94%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABQ9

Fln msg: Distance to subject end: 233 aas, your sequence is shorter than subject: 151 - 445

Fln protein: PAILMDLEPGTMDSVRAGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRMMCTFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMVIDNEALYDICF

Protein Length: 152

Fln nts: CCTGCCATTTTAATGGATTTAGAACCTGGTACCATGGATTCAGTTCGCGCTGGTCCTTTCGGTCAAATCTTCCGCCCTGATAACTTCGTCTTCGGTCAATCAGGTGCTGGTAACAACTGGGCCAAGGGTCACTACACTGAAGGTGCTGAATTAATCGATTCAGTATTAGATGTCGTCCGCAAGGAAGCTGAATCATGTGATTGTTTACAAGGTTTCCAAATCACTCACTCATTAGGTGGTGGTACAGGTTCAGGTATGGGTACTTTATTAATCTCAAAGATTCGTGAAGAATACCCAGATCGTATGATGTGTACCTTCTCAGTCTTCCCATCACCAAAGGTATCAGATACAGTCGTCGAACCATACAACGCCACATTATCAGTCCATCAATTAGTCGAAAACGCTGATGAAGTAATGGTCATTGATAACGAAGCTTTATACGATATCTGTTTCC

Fln Alignment:

HLKU4M004JUUDT___AILMDLEPGTMDSVRAGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQIXXXXXXXXXXXXXXXXXXKIREEYPDRMMCTFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMVIDNEALYDICF
D5ABQ9________________AVLMDLEPGTMDSVRTGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain