SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene155497

Length: 546 nt

UniGene Fasta

>sp_v3.0_unigene155497
TGGAAATGACCCAAAAGATTTATCTCCTCTTGATTTCAGTGATATGCAGACTCCCTCCGCGTCATCGGTGGATCATTCAATCAATTCATCAAATGTCGGATTCCAAATGCTCCAGAAATTTGGCTGGAATGAATCGAAAGGATTGGGTAAAGATGAAAAAGGGATTGTGGATCCAATTCAGTTAAAAACTGTTGATAGTCTCAGTGGTGGTAGTGGCTCAGTGAATACAGAAGAAGAAGATACAGCTGATGCAGCTGTTGGTGAAGTCACAAAAGAGCGTCGAAAACTCGATATTGAATTAGAACAGACTGGTGCAATGCTTGCTCGTAAAGCTGACAATGCTGAAAGAGCTCAACTGATCGAAAATGAACTCAAATTAATTCATCGAGAATTTTATTGTGAGTGGTGTGACAAACAATACAAGAATGTTTCTGAGATGGCATCACACTTAGATTCCTATGATCATCATCACGCGAAGAGATTAAAAGACCTGAAACAAGCGGACAAGAAGCGAGCATTCTCTACTGGTGCTGGTGAAGATGACAC

Ace file of the UniGene sp_v3.0_unigene155497

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	D111/G-patch; Zinc finger, C2H2-type n=1 Tax=Medicago truncatula RepID=Q2HRQ8_MEDTR	-	-	5.0e-30	44%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	43%
Sma3	D111/G-patch	-	-	3.899e-06	-

Source	Gene names
Sma3	MtrDRAFT_AC157894g37v2;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	G-patch domain	IPR000467	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1NBM6

Fln msg: Distance to subject end: 92 aas, your sequence is shorter than subject: 181 - 304

Fln protein: GNDPKDLSPLDFSDMQTPSASSVDHSINSSNVGFQMLQKFGWNESKGLGKDEKGIVDPIQLKTVDSLSGGSGSVNTEEEDTADAAVGEVTKERRKLDIELEQTGAMLARKADNAERAQLIENELKLIHREFYCEWCDKQYKNVSEMASHLDSYDHHHAKRLKDLKQADKKRAFSTGAGEDD

Protein Length: 182

Fln nts: TGGAAATGACCCAAAAGATTTATCTCCTCTTGATTTCAGTGATATGCAGACTCCCTCCGCGTCATCGGTGGATCATTCAATCAATTCATCAAATGTCGGATTCCAAATGCTCCAGAAATTTGGCTGGAATGAATCGAAAGGATTGGGTAAAGATGAAAAAGGGATTGTGGATCCAATTCAGTTAAAAACTGTTGATAGTCTCAGTGGTGGTAGTGGCTCAGTGAATACAGAAGAAGAAGATACAGCTGATGCAGCTGTTGGTGAAGTCACAAAAGAGCGTCGAAAACTCGATATTGAATTAGAACAGACTGGTGCAATGCTTGCTCGTAAAGCTGACAATGCTGAAAGAGCTCAACTGATCGAAAATGAACTCAAATTAATTCATCGAGAATTTTATTGTGAGTGGTGTGACAAACAATACAAGAATGTTTCTGAGATGGCATCACACTTAGATTCCTATGATCATCATCACGCGAAGAGATTAAAAGACCTGAAACAAGCGGACAAGAAGCGAGCATTCTCTACTGGTGCTGGTGAAGATGACAC

Fln Alignment:

HLKU4M004IL9ZL___PKDLSPLDFSDMQTPSASSVDHSINSSNVGFQMLQKFGWNESKGLGKDEKGIVDPIQLKTVDSLSGGSGSVNTEEEDTADAAVGEVTKERRKLDIELEQTGAMLARKADNAERAQLIENELKLIHREFYCEWCDKQYKNVSEMASHLDSYDHHHAKRLKDLKQ
I1NBM6________________PINHRPTENVDLDNVEQASLDTQITSSNIGFKLLQKMGW-KGKGLGKDEQGIIEPIKSGIRDPRLG----VGKQEED--DFFTAEENIQRKKLDVELEETEEHVKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKQMKE

SSRs (tot: 1)

Start position	End position	Sequence	Length
229	240	AGA AGA AGA AGA	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain