SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene155487

Length: 246 nt

UniGene Fasta

>sp_v3.0_unigene155487
TGTTGATGTCCATGGTCCTCATTTGTACAGCATCCATCCCCATGGTTCTACACAGCGTCTTCCCTACACCACGATGGGGTCTGGCTCTTTGGCCGCTATGGCGGTGTTCGAATCGCGCTTCCAAGAAGACCTTGAAGAACAACCTGCTATCGATTTGGTACGTGATGCTATTCGTGCGGGTATTTTCAATGATCTTGGATCGGGTTCTAATGTGGACATTACGGTGATCAGAAGAGATAATACTGT

Ace file of the UniGene sp_v3.0_unigene155487

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proteasome subunit beta type n=1 Tax=Tribolium castaneum RepID=D6WKM7_TRICA	-	-	3.0e-28	76%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Sma3	Proteasome subunit beta type 7,10, putative	-	-	1.687e-08	-

Source	Gene names
Sma3	AT3G27430; At3g27430; At5g40580; CHLREDRAFT_186317; GSVIVT00030725001; K1G2.15; MICPUCDRAFT_27663; MICPUN_107407; MNF13.10; MtrDRAFT_AC150800g35v2; OJ1097_A12.2; Os05g0187000; OsI_18743; OsJ_17385; OsPBB1; Ot02g04420; PBB1; PBB2; PHATRDRAFT_14571; PHATRDR

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	proteasome core complex	GO:0005839	Cellular Component	-
Sma3	threonine-type endopeptidase activity	GO:0004298	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase T1A, proteasome beta-subunit	IPR000243	-	-
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G27430.2	PBB1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein chr3:10152910-10155052 FORWARD LENGTH=273	5.0e-29	62%
RefSeq	Arabidopsis thaliana	NP_001189989.1	proteasome subunit beta type-7-A [Arabidopsis thaliana]	6.0e-29	62%
RefSeq	Populus trichocarpa	XP_002323800.1	predicted protein [Populus trichocarpa]	9.0e-29	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NYV8

Fln msg: Distance to subject end: 50 aas, your sequence is shorter than subject: 81 - 273

Fln protein: VDVHGPHLYSIHPHGSTQRLPYTTMGSGSLAAMAVFESRFQEDLEEQPAIDLVRDAIRAGIFNDLGSGSNVDITVIRRDNT

Protein Length: 82

Fln nts: TGTTGATGTCCATGGTCCTCATTTGTACAGCATCCATCCCCATGGTTCTACACAGCGTCTTCCCTACACCACGATGGGGTCTGGCTCTTTGGCCGCTATGGCGGTGTTCGAATCGCGCTTCCAAGAAGACCTTGAAGAACAACCTGCTATCGATTTGGTACGTGATGCTATTCGTGCGGGTATTTTCAATGATCTTGGATCGGGTTCTAATGTGGACATTACGGTGATCAGAAGAGATAATACTGT

Fln Alignment:

HLKU4M004ISM7V___VDVHGPHLYSIHPHGSTQRLPYTTMGSGSLAAMAVFESRFQEDLEEQPAIDLVRDAIRAGIFNDLGSGSNVDITVIRR
A9NYV8________________VDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESRYREGMTREEGIKLVCQAICSGIFNDLGSGSNVDVCVITK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain