SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene155462

Length: 247 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene155462
CATTGGTATCTACGGTATGGACTTCTTCGCCGTCATGGGCCGCCCAGGTCTCAGCGTCGCCAAGCGCCGCATCCGCAAGGCCACCGTCGGTGCCCCACACCGCATCACCAAGGCCGACTCCCAGAAGTGGTTCAAGCAGAAGTTCGATGGTGTCCTCCTGCCAGGTGCCAAGAAGAAGAAGGGCAAGTTCAGCAAGCGCAAGTAAGCGTTGCAGTCTTCATGAACGTCACAAATAAAATCGACTCAT

Ace file of the UniGene sp_v3.0_unigene155462 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: ribosomal protein L11-like n=1 Tax=Saccoglossus kowalevskii RepID=UPI0001CBBF8D	-	-	4.0e-15	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L5	IPR002132	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G42740.1	RPL16A ribosomal protein large subunit 16A chr2:17791794-17792946 FORWARD LENGTH=182	3.0e-16	59%
RefSeq	Arabidopsis thaliana	NP_850376.2	60S ribosomal protein L11-1 [Arabidopsis thaliana]	4.0e-16	59%
RefSeq	Populus trichocarpa	XP_002309361.1	predicted protein [Populus trichocarpa]	6.0e-14	53%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACF6

Fln msg: your sequence is shorter than subject: 68 - 180

Fln protein: IGIYGMDFFAVMGRPGLSVAKRRIRKATVGAPHRITKADSQKWFKQKFDGVLLPGAKKKKGKFSKRK*

Protein Length: 69

Fln nts: CATTGGTATCTACGGTATGGACTTCTTCGCCGTCATGGGCCGCCCAGGTCTCAGCGTCGCCAAGCGCCGCATCCGCAAGGCCACCGTCGGTGCCCCACACCGCATCACCAAGGCCGACTCCCAGAAGTGGTTCAAGCAGAAGTTCGATGGTGTCCTCCTGCCAGGTGCCAAGAAGAAGAAGGGCAAGTTCAGCAAGCGCAAGTAA___GCGTTGCAGTCTTCATGAACGTCACAAATAAAATCGACTCAT

Fln Alignment:

HLKU4M004JZUH1___GIYGMDFFAVMGRPGLSVAKRRIRKATVGAPHRITKADSQKWFKQKFDGVLL
D5ACF6________________GIYGMDFFVVLERPGYRVGRRKRAQSRVGIQHRVTKEDSMKWFQVKYEGVIL

SSRs (tot: 1)

Start position	End position	Sequence	Length
67	78	CTT CTT CTT CTT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain