SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene155355

Length: 343 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene155355
ATGGGAATTGGCCCTGCTCCTGCTATCAGAATTCTGTTGAACAAAACTGGTCAATCCCTCAACGATATAGATCTATTTGAAATCAATGAGGCATTTGCTGCACAAACACTTGCTGTTGGCAAAGATCTTAGCTTGGACTTAAACAAACTCAACATCTGGGGTGGGGCTATTGCTATTGGGCATCCCTTGGGCGCGACTGGTCTTCGTATTACCCTCACTTTGGCTCATCAGCTTAAGAAGACGGGCAAGAAGCAAGGTATTGCTTCTGCTTGTATTGGTGGTGGTCAAGGGATTGCTTTGCAGTTGACCAATTTGTCAGAATAAAACGCTTCAATCAATCTAC

Ace file of the UniGene sp_v3.0_unigene155355 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative mitochondrial acetyl-coenzyme A acyltransferase 2 (Fragment) n=1 Tax=Maconellicoccus hirsutus RepID=A3EXP3_MACHI	-	-	4.0e-35	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	3-ketoacyl-CoA thiolase	-	-	1.201e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Acetyl-CoA C-acyltransferase.	EC:2.3.1.16	-	1.23314e-43	-

Source	KEGGs	Term	e value	Identity
Sma3	Fatty acid elongation in mitochondria	00062	1.23314e-43	%
Sma3	Fatty acid metabolism	00071	1.23314e-43	%
Sma3	Valine, leucine and isoleucine degradation	00280	1.23314e-43	%
Sma3	Geraniol degradation	00281	1.23314e-43	%
Sma3	Benzoate degradation	00362	1.23314e-43	%
Sma3	alpha-Linolenic acid metabolism	00592	1.23314e-43	%
Sma3	Ethylbenzene degradation	00642	1.23314e-43	%
Sma3	Biosynthesis of unsaturated fatty acids	01040	1.23314e-43	%
Sma3	Biosynthesis of plant hormones	01070	1.23314e-43	%
Sma3	Metabolic pathways	01100	1.23314e-43	%
Sma3	Biosynthesis of secondary metabolites	01110	1.23314e-43	%

Source	Gene names
Sma3	ATO1; At1g04710; At2g33150; At5g48880; CHLREDRAFT_138637; DY1A; F25I18.11; GSVIVT00001258001; GSVIVT00020472001; K24G6.22; KAT1; KAT2; KAT5; KCT1; LOC_Os10g31950; MICPUCDRAFT_44754; MICPUN_105088; OJ1136_C12.17; OSJNBb0011A08.2; OSTLU_40909; Os02g0817700;

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	glyoxysome	GO:0009514	Cellular Component	-
Sma3	flagellum	GO:0019861	Cellular Component	-
Sma3	dynein complex	GO:0030286	Cellular Component	-
Sma3	microtubule motor activity	GO:0003777	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	acetyl-CoA C-acyltransferase activity	GO:0003988	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3		GO:0008415	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	oxylipin biosynthetic process	GO:0031408	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Thiolase	IPR002155	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Dynein heavy chain	IPR004273	-	-
Sma3	ATPase, dynein-related, AAA domain	IPR011704	-	-
Sma3	Dynein heavy chain, domain-1	IPR013594	-	-
Sma3	Dynein heavy chain, domain-2	IPR013602	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G04710.1	KAT1, PKT4 peroxisomal 3-ketoacyl-CoA thiolase 4 chr1:1321941-1324556 FORWARD LENGTH=443	2.0e-29	55%
RefSeq	Arabidopsis thaliana	NP_171965.1	acetyl-CoA acyltransferase 1 [Arabidopsis thaliana]	2.0e-29	55%
RefSeq	Populus trichocarpa	XP_002299284.1	predicted protein [Populus trichocarpa]	6.0e-28	54%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMA1

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 20 aas, your sequence is shorter than subject: 108 - 462

Fln protein: MGIGPAPAIRILLNKTGQSLNDIDLFEINEAFAAQTLAVGKDLSLDLNKLNIWGGAIAIGHPLGATGLRITLTLAHQLKKTGKKQGIASACIGGGQGIALQLTNLSE*

Protein Length: 109

Fln nts: ATGGGAATTGGCCCTGCTCCTGCTATCAGAATTCTGTTGAACAAAACTGGTCAATCCCTCAACGATATAGATCTATTTGAAATCAATGAGGCATTTGCTGCACAAACACTTGCTGTTGGCAAAGATCTTAGCTTGGACTTAAACAAACTCAACATCTGGGGTGGGGCTATTGCTATTGGGCATCCCTTGGGCGCGACTGGTCTTCGTATTACCCTCACTTTGGCTCATCAGCTTAAGAAGACGGGCAAGAAGCAAGGTATTGCTTCTGCTTGTATTGGTGGTGGTCAAGGGATTGCTTTGCAGTTGACCAATTTGTCAGAATAA___AACGCTTCAATCAATCTAC

Fln Alignment:

HLKU4M004I7QTY___MGIGPAPAIRILLNKTGQSLNDIDLFEINEAFAAQTLAVGKDLSLDLNKLNIWGGAIAIGHPLGATGLRITLTLAHQLKKTGK--KQGIASACIGGGQGIA
B8LMA1________________MGVGPAVAIPAAVKAAGLEIDDIDLFEINEAFASQFTYCSQKLELDPEKVNVNGGAIALGHPLGATGARCVATLLHEMKRRGKDCRFGVISMCIGTGMGAA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain