SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene155283

Length: 223 nt

UniGene Fasta

>sp_v3.0_unigene155283
GAGCCAAGATGGGTATCGATCTTCGTTTCCACCACAAGAAGAACAAGAATAGAACAGAACCAAGAAGTCAAGATGTTTACCTCCGTCTTTTGATCAAGCTTTATCGCTTCCTTTCTCGCCGTACAAATGCTAGATTTAACAAGGTCATCTTAAAGAGACTTTGTATGAGCAGAACCAACAGAGCACCTATTTCCATTTCCAGAATTGCTCGTTACATGAAGGG

Ace file of the UniGene sp_v3.0_unigene155283

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein L18 n=1 Tax=Hister sp. APV-2005 RepID=Q4GXG8_9COLE	-	-	2.0e-21	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Sma3	Ribosomal protein L18	-	-	6.09e-35	-

Source	Gene names
Sma3	At2g47570; At3g05590; At5g27850; CHLREDRAFT_195589; F14I23.10; F18C1.14; GSVIVT00022684001; GSVIVT00033028001; LOC_Os03g22180; MICPUCDRAFT_25478; OSTLU_33583; Os03g0341100; Os05g0155100; Os07g0674700; OsI_11506; OsI_18515; OsI_27311; OsJ_10788; OsJ_17172;

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L18e	IPR000039	-	-
Sma3	Pseudouridine synthase/archaeosine transglycosylase	IPR002478	-	-
Sma3	Uncharacterised domain CHP00451	IPR004521	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G27850.1	Ribosomal protein L18e/L15 superfamily protein chr5:9873169-9874297 FORWARD LENGTH=187	9.0e-22	60%
RefSeq	Arabidopsis thaliana	NP_198137.1	60S ribosomal protein L18-3 [Arabidopsis thaliana]	1.0e-21	60%
RefSeq	Populus trichocarpa	XP_002320999.1	predicted protein [Populus trichocarpa]	8.0e-23	59%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0A7

Fln msg: Distance to subject end: 114 aas, your sequence is shorter than subject: 71 - 187

Fln protein: MGIDLRFHHKKNKNRTEPRSQDVYLRLLIKLYRFLSRRTNARFNKVILKRLCMSRTNRAPISISRIARYMK

Protein Length: 72

Fln nts: GAGCCAAG_-_ATGGGTATCGATCTTCGTTTCCACCACAAGAAGAACAAGAATAGAACAGAACCAAGAAGTCAAGATGTTTACCTCCGTCTTTTGATCAAGCTTTATCGCTTCCTTTCTCGCCGTACAAATGCTAGATTTAACAAGGTCATCTTAAAGAGACTTTGTATGAGCAGAACCAACAGAGCACCTATTTCCATTTCCAGAATTGCTCGTTACATGAAGGG

Fln Alignment:

HLKU4M004JIQEJ___MGIDLRFHHK-KNKNRTEPRSQDVYLRLLIKLYRFLSRRTNARFNKVILKRLCMSRTNRAPISISRIARYMK
A9P0A7________________MGIDLIAGGKSKQTRRTAPKSEDIYLKLLVKLYRFLVRRTSSRFNAVILKRLFMSKTNKPPLSLSRLARYMQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain