SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene155229

Length: 507 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene155229

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cyclophilin, putative n=4 Tax=Plasmodium RepID=A5K4H5_PLAVS	-	-	62%
FL-Next	sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Sma3	Peptidyl-prolyl cis-trans isomerase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peptidylprolyl isomerase.	EC:5.2.1.8	-	0.0	-

Source	Gene names
Sma3	43H1; AT3G63400; AT4g33060; At1g01940; At2g15790; At2g36130; At3g44600; At3g44600/F14L2_150; At3g56070; At3g63400; At4g33060; At4g34870; At4g38740; At5g13120; At5g67530; B1097D05.29; B1331F11.9; CHLREDRAFT_112209; CHLREDRAFT_132902; CHLREDRAFT_185571; CHL

Source	GOs	Term	Type	Identity
Sma3	ubiquitin ligase complex	GO:0000151	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	thylakoid lumen	GO:0031977	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	peptide binding	GO:0042277	Molecular Function	-
Sma3	histone binding	GO:0042393	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	RNA splicing	GO:0008380	Biological Process	-
Sma3	plant-type hypersensitive response	GO:0009626	Biological Process	-
Sma3	regulation of flower development	GO:0009909	Biological Process	-
Sma3	meristem structural organization	GO:0009933	Biological Process	-
Sma3	vegetative phase change	GO:0010050	Biological Process	-
Sma3	regulation of root meristem growth	GO:0010082	Biological Process	-
Sma3	leaf vascular tissue pattern formation	GO:0010305	Biological Process	-
Sma3	leaf formation	GO:0010338	Biological Process	-
Sma3	leaf shaping	GO:0010358	Biological Process	-
Sma3	floral meristem determinacy	GO:0010582	Biological Process	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-
Sma3	regulation of histone methylation	GO:0031060	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	carpel development	GO:0048440	Biological Process	-
Sma3	stamen development	GO:0048443	Biological Process	-
Sma3	sepal formation	GO:0048453	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G01940.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein chr1:323082-324719 FORWARD LENGTH=160	65%
RefSeq	Arabidopsis thaliana	NP_171696.2	peptidyl-prolyl cis-trans isomerase-like 3 [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002302542.1	predicted protein [Populus trichocarpa]	66%

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain