SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene155101

Length: 278 nt

UniGene Fasta

>sp_v3.0_unigene155101
TTTACTCTATACTTTAAGGGAAGAGGAAATGCGCACGATCCTCCACGACTCGGTCATCGACATCCCGAAGGACGTCAAAATCCACATTAAGTCCCGCACTGTGACTGTGCAGGGCCCGCGTGGCACGCTCCGCCGTGACTTCAAGCACCTCGCCGTCGACATGTCGATCATCAACGGCGGCAAGCAGTTGAAGGCTGAGCTGTGGTTCGGCACCCGCAAAGCGATGGCCTGCATCCGCACGGTCACGACGCACATCAAGAACATGATCACGGGTGTGA

Ace file of the UniGene sp_v3.0_unigene155101

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L9 n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9C3J9_9EUKA	-	-	6.0e-22	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%

Source	Gene names
Sma3	PHYPADRAFT_108826; PHYPADRAFT_182540; PHYPADRAFT_191598;

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L6	IPR000702	-	0.0	-
Sma3	Ribosomal protein L6, conserved site-2	IPR002359	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G33140.1	PGY2 Ribosomal protein L6 family chr1:12023360-12024502 FORWARD LENGTH=194	4.0e-22	48%
RefSeq	Arabidopsis thaliana	NP_564418.1	60S ribosomal protein L9-1 [Arabidopsis thaliana]	5.0e-22	48%
RefSeq	Populus trichocarpa	XP_002300532.1	predicted protein, partial [Populus trichocarpa]	2.0e-23	50%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZL8

Fln msg: Distance to subject end: 106 aas, your sequence is shorter than subject: 83 - 189

Fln protein: MRTILHDSVIDIPKDVKIHIKSRTVTVQGPRGTLRRDFKHLAVDMSIINGGKQLKAELWFGTRKAMACIRTVTTHIKNMITGV

Protein Length: 84

Fln nts: TTTACTCTATACTTTAAGGGAAGAGGAA_-_ATGCGCACGATCCTCCACGACTCGGTCATCGACATCCCGAAGGACGTCAAAATCCACATTAAGTCCCGCACTGTGACTGTGCAGGGCCCGCGTGGCACGCTCCGCCGTGACTTCAAGCACCTCGCCGTCGACATGTCGATCATCAACGGCGGCAAGCAGTTGAAGGCTGAGCTGTGGTTCGGCACCCGCAAAGCGATGGCCTGCATCCGCACGGTCACGACGCACATCAAGAACATGATCACGGGTGTGA

Fln Alignment:

HLKU4M004JUQC6___MRTILHDSVIDIPKDVKIHIKSRTVTVQGPRGTLRRDFKHLAVDMSIINGGKQLKAELWFGTRKAMACIRTVTTHIKNMITGV
A9NZL8________________MKTILASQTMDIPEGVKVEVRAKQIKVTGSRGTLTRNFKHLNLDFQLMEGGRKLKVDAWFGSRKTMAAIRTAISHVTNLITGV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain