SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene155079

Length: 321 nt

UniGene Fasta

>sp_v3.0_unigene155079
AAGATCATCATCAAGAACTTGCCCTTCCAGACTACCAAAAAGGACATCCGAACGCTATTCGGGACCTACGGCCAGCTGAGATCCGTGCGCCTTCCCAAAAAGGCAGACTATACCCCAAGGGGTTTTGCATTTGCAGAATTCGTCACTCCCCGAGAAGCCGAGAACGCACTAAATGCGCTTCGGGACACCCATCTTCTGGGCCGTAAGCTGGTGCTGGACTTTGCAGAGGCAGAGGCAGTTGATGCGGAGGAGGAGATTGCAAAGATGCAGAGGAAAGTAGGAGGCCAAGTCAACAAGGTAGCCCTTCAACAGTTGACTGGG

Ace file of the UniGene sp_v3.0_unigene155079

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MRD1-like protein n=3 Tax=Metarhizium RepID=E9EMI6_METAR	-	-	2.0e-40	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%

Source	Gene names
Sma3	GSVIVT00030096001; MICPUCDRAFT_16164; OSTLU_710; POPTRDRAFT_413036; THAPSDRAFT_268689;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	0.0	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G19610.1	" nucleotide binding;nucleic acid binding;RNA binding chr4:10677482-10681623 FORWARD LENGTH=816"	3.0e-17	50%
RefSeq	Arabidopsis thaliana	NP_193696.3	nucleotide/nucleic acid binding protein [Arabidopsis thaliana]	4.0e-17	50%
RefSeq	Populus trichocarpa	XP_002303703.1	predicted protein, partial [Populus trichocarpa]	1.0e-19	54%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8Y2

Fln msg: STOP codon was not found. Distance to subject end: 6 aas, your sequence is shorter than subject: 107 - 181

Fln protein: KIIIKNLPFQTTKKDIRTLFGTYGQLRSVRLPKKADYTPRGFAFAEFVTPREAENALNALRDTHLLGRKLVLDFAEAEAVDAEEEIAKMQRKVGGQVNKVALQQLTG

Protein Length: 108

Fln nts: AAGATCATCATCAAGAACTTGCCCTTCCAGACTACCAAAAAGGACATCCGAACGCTATTCGGGACCTACGGCCAGCTGAGATCCGTGCGCCTTCCCAAAAAGGCAGACTATACCCCAAGGGGTTTTGCATTTGCAGAATTCGTCACTCCCCGAGAAGCCGAGAACGCACTAAATGCGCTTCGGGACACCCATCTTCTGGGCCGTAAGCTGGTGCTGGACTTTGCAGAGGCAGAGGCAGTTGATGCGGAGGAGGAGATTGCAAAGATGCAGAGGAAAGTAGGAGGCCAAGTCAACAAGGTAGCCCTTCAACAGTTGACTGGG

Fln Alignment:

HLKU4M004IVJOQ___KIIIKNLPFQTTKKDIRTLFGTYGQLRSVRLPKKADYTPRGFAFAEFVTPREAENALNALRDTHLLGRKLVLD
D5A8Y2________________KIIVRNVAFEATKKDLSQLFSPFGQIKSLRLPKKADQSHRGFAFIEFVTKQEAENAFNALSSSHLYGRHLVLE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain