SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene154999

Length: 358 nt

UniGene Fasta

>sp_v3.0_unigene154999
CAGATGGCGGATGTGGTAAAGAAACCAAAGGCTGGGTTGGAAGGGGAGGAAGCGAATTATATGAAGATTCGCATTACCCTCACCTCCTGCAACATGCGAAATGTCGAGAAAGTGTGTGCTGAATTGATTAAAGGCGCAACCAACCAAGGCTTGAAGGTCCGCGGGCCCATTCGTCTCCCAACAAAAACTCTTCGCATTACCACTCGCAAGTCCCCTTGCGGTGAAGGCACAAACACATTTGATCGATTTGAGATGCGAATTCACAAGCGCTTGATTGATCTCCACAGCCCCTCTGAAGTTGTGAAGCAAATCACTTCTATCAACATTGAACCAGGTGTTGATGTTGATGTTGAAGTTG

Ace file of the UniGene sp_v3.0_unigene154999

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S20, putative n=2 Tax=Toxoplasma gondii RepID=B6KQG9_TOXGO	-	-	2.0e-40	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Sma3	40S ribosomal protein S20	-	-	1.267e-14	-

Source	Gene names
Sma3	At3g45030; At3g47370; At5g62300; CHLREDRAFT_195592; F14D17_100; LOC_Os03g14530; LOC_Os10g08930; MICPUCDRAFT_35904; MICPUN_57744; MMI9.13; MMI9_120; MtrDRAFT_AC144805g11v2; MtrDRAFT_AC157891g29v2; OSJNBa0071I20.6; OSTLU_30430; Os03g0249400; Os06g0134000; O

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	small ribosomal subunit	GO:0015935	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S10	IPR001848	-	-
Sma3	Ribosomal protein S10, eukaryotic/archaeal	IPR005729	-	-
Sma3	Ribosomal protein S10, conserved site	IPR018268	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G47370.2	Ribosomal protein S10p/S20e family protein chr3:17453671-17454437 REVERSE LENGTH=122	62%
RefSeq	Arabidopsis thaliana	NP_001030826.1	40S ribosomal protein S20-2 [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002302530.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NR88

Fln msg: STOP codon was not found. Distance to subject end: 3 aas, atg_distance in limit (1-15): atg_distance = 1,

Fln protein: MADVVKKPKAGLEGEEANYMKIRITLTSCNMRNVEKVCAELIKGATNQGLKVRGPIRLPTKTLRITTRKSPCGEGTNTFDRFEMRIHKRLIDLHSPSEVVKQITSINIEPGVDVDVEV

Protein Length: 119

Fln nts: CAG_-_ATGGCGGATGTGGTAAAGAAACCAAAGGCTGGGTTGGAAGGGGAGGAAGCGAATTATATGAAGATTCGCATTACCCTCACCTCCTGCAACATGCGAAATGTCGAGAAAGTGTGTGCTGAATTGATTAAAGGCGCAACCAACCAAGGCTTGAAGGTCCGCGGGCCCATTCGTCTCCCAACAAAAACTCTTCGCATTACCACTCGCAAGTCCCCTTGCGGTGAAGGCACAAACACATTTGATCGATTTGAGATGCGAATTCACAAGCGCTTGATTGATCTCCACAGCCCCTCTGAAGTTGTGAAGCAAATCACTTCTATCAACATTGAACCAGGTGTTGATGTTGATGTTGAAGTTG

Fln Alignment:

HLKU4M004IBJD8___VVKKPKAGLEGEEANYMKIRITLTSCNMRNVEKVCAELIKGATNQGLKVRGPIRLPTKTLRITTRKSPCGEGTNTFDRFEMRIHKRLIDLHSPSEVVKQITSINIEPGVDVDVEV
A9NR88________________MMKPMKAGLEDPQEDLHRIRITLSSKNVKNLEKVCADLVRGAKDKRLKVKGPVRMPTKVLNHTTRKSPCGEGTNTWDRFELRVHKRIIDLVSSSEVVKQITSITIEPGVEVEVTI

SSRs (tot: 1)

Start position	End position	Sequence	Length
336	353	TGTTGA TGTTGA TGTTGA	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain