SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene154849

Length: 444 nt

UniGene Fasta

>sp_v3.0_unigene154849
TCATGTACACCTGTTGGCAATTCTACGAACGTAATCCTTCCGGCTTGGGCCCCGAAATAGCATCTTTGAATACACAACGTGCGGGTTTCACGAATCAAGCGGCTCACTACCTGCTTCGACCTGAAACGGTAGAGAGCTTGTTCATCTTATATCGAGTTACGGGCGACGAAAAATACCAAGAATGGGGTTGGAAGATTTTCCAAGCCCTCGAAGCGAATTGTAAGACGGAAGTTGGTTATTCCGGAGTGAGAGACGTGGGCGCGTCCCGTGTCACGCACGATGACAAGGCCGAAAGTTTCTTTTTGGCAGATACGCTGAAGTACTTGTATTTTATTGTTCTCTCCTAAGGACCTCATTCCTTTGGACCAATTCGTATTTAACACCGAAGCGCATCCGACCTCTATTTTTACTAAAATTCAAAATTAAAGCACAAGGAAAGAAAAC

Ace file of the UniGene sp_v3.0_unigene154849

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glycoside hydrolase family 47 protein [Dictyostelium discoideum AX4] gb\|EAL72966.1\| glycoside hydrolase family 47 protein [Dictyostelium discoideum AX4]	-	-	3.0e-31	50%
FL-Next	sp=Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	47%
Sma3	Uncharacterized protein At1g51590.2	-	-	9.747e-06	-

Source	Gene names
Sma3	At1g51590; F19C24.18; F5D21.1; GSVIVT00008672001; PHATRDRAFT_bd36;

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	GO:0004571	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycoside hydrolase, family 47	IPR001382	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G21160.1	MNS2, MANIA alpha-mannosidase 2 chr3:7414129-7418328 REVERSE LENGTH=572	5.0e-30	47%
RefSeq	Arabidopsis thaliana	NP_566675.1	mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS2 [Arabidopsis thaliana]	6.0e-30	47%
RefSeq	Populus trichocarpa	XP_002306001.1	predicted protein [Populus trichocarpa]	2.0e-28	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8H116

Fln msg: Overlapping hits, possible frame ERROR between 335 and 331, Unexpected STOP codon at 3' end. Distance to subject end: 22 aas, your sequence is shorter than subject: 142 - 572

Fln protein: MYTCWQFYERNPSGLGPEIASLNTQRAGFTNQAAHYLLRPETVESLFILYRVTGDEKYQEWGWKIFQALEANCKTEVGYSGVRDVGASRVTHDDKAESFFLADTLKYLYxxxFSPKDLIPLDQFVFNTEAHPTSIFTKIQN*

Protein Length: 143

Fln nts: TCATGTACACCTGTTGGCAATTCTACGAACGTAATCCTTCCGGCTTGGGCCCCGAAATAGCATCTTTGAATACACAACGTGCGGGTTTCACGAATCAAGCGGCTCACTACCTGCTTCGACCTGAAACGGTAGAGAGCTTGTTCATCTTATATCGAGTTACGGGCGACGAAAAATACCAAGAATGGGGTTGGAAGATTTTCCAAGCCCTCGAAGCGAATTGTAAGACGGAAGTTGGTTATTCCGGAGTGAGAGACGTGGGCGCGTCCCGTGTCACGCACGATGACAAGGCCGAAAGTTTCTTTTTGGCAGATACGCTGAAGTACTTGTATxxxxxxxxxTTCTCTCCTAAGGACCTCATTCCTTTGGACCAATTCGTATTTAACACCGAAGCGCATCCGACCTCTATTTTTACTAAAATTCAAAATTAAAGCACAAGGAAAGAAAAC

Fln Alignment:

HLKU4M004IO1QH___YTCWQFYERNPSGLGPEIASLNTQRAGFTNQAAHYLLRPETVESLFILYRVTGDEKYQEWGWKIFQALEANCKTEVGYSGVRDVGASRVTHDDKAESFFLADTLKYLYxxFSPKDLIPLDQFVFNTEAHPTSIFTKIQN*STRKEN
Q8H116________________WTCYNFYQSTPTKLAGENYFFNSG-SDMSVGTSWNILRPETVESLFYLWRLTGNKTYQEWGWNIFEAFEKNSRIESGYVGLKDVNTG--VKDNKMQSFFLAETLKYLYxxFSPTTVIPLDEWVFNTEAHPLKIKSRNDQVNLKQSN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain