SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene154827

Length: 384 nt

UniGene Fasta

>sp_v3.0_unigene154827
AATCACTGGTCGCCGAAAGCCAGATGCAAAGAATCCCACACCTAAGGTGTATCGGATGAAAATCTTTGCCAACAACACCGTTGTTGCTCGCTCGCGTTTCTGGTACTACCTTTCCAAGCTCAAGAAGGTCAAGCGTGCCAACGGTGAGATTGTTGAGATCCACGAGATCTTCGAGAAGAACCCCAACATCGTCAAAACCTATGGCTTGTGGTTGCGATACGACAGTCGTAGCGGTACCCACAACATGTACAAGGAGTACCGTGATGTGACTCTCAACGCTGCTGTTCGCAAGATGTATGCCGATCTGGCCTCCCGCCACCGAGCCCGCAAGTCTGCCGTGCAAATTATTCGCACCGCCATCGTGGCTGGCAAAGACGCCAAGCG

Ace file of the UniGene sp_v3.0_unigene154827

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L18a putative n=1 Tax=Albugo laibachii Nc14 RepID=F0WM08_9STRA	-	-	3.99931e-42	59%
FL-Next	sp=60S ribosomal protein L18a; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Sma3	Ribosomal protein L18a	-	-	3.829e-13	-

Source	Gene names
Sma3	AT3G14600; At1g29965; At1g29970; At2g34480; At3g14600; CHLREDRAFT_146844; GSVIVT00003438001; GSVIVT00003441001; GSVIVT00005870001; MICPUCDRAFT_49713; MICPUN_57540; MIE1.10; OSJNBb0053D02.16; OSJNBb0063G05.12; OSTLU_32420; Os01g0666900; Os01g0752300; Os05g

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR002670	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G34480.1	Ribosomal protein L18ae/LX family protein chr2:14532916-14534161 REVERSE LENGTH=178	57%
RefSeq	Arabidopsis thaliana	NP_180995.1	60S ribosomal protein L18a-2 [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002317384.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0B9

Fln msg: Distance to subject end: 40 aas, atg_distance in limit (1-15): atg_distance = 11, W2: There is no M at the beginning, your sequence is shorter than subject: 127 - 178

Fln protein: ITGRRKPDAKNPTPKVYRMKIFANNTVVARSRFWYYLSKLKKVKRANGEIVEIHEIFEKNPNIVKTYGLWLRYDSRSGTHNMYKEYRDVTLNAAVRKMYADLASRHRARKSAVQIIRTAIVAGKDAK

Protein Length: 128

Fln nts: AATCACTGGTCGCCGAAAGCCAGATGCAAAGAATCCCACACCTAAGGTGTATCGGATGAAAATCTTTGCCAACAACACCGTTGTTGCTCGCTCGCGTTTCTGGTACTACCTTTCCAAGCTCAAGAAGGTCAAGCGTGCCAACGGTGAGATTGTTGAGATCCACGAGATCTTCGAGAAGAACCCCAACATCGTCAAAACCTATGGCTTGTGGTTGCGATACGACAGTCGTAGCGGTACCCACAACATGTACAAGGAGTACCGTGATGTGACTCTCAACGCTGCTGTTCGCAAGATGTATGCCGATCTGGCCTCCCGCCACCGAGCCCGCAAGTCTGCCGTGCAAATTATTCGCACCGCCATCGTGGCTGGCAAAGACGCCAAGCG

Fln Alignment:

HLKU4M004I88IY___ITGRRKPDAKNPTPKVYRMKIFANNTVVARSRFWYYLSKLKKVKRANGEIVEIHEIFEKNPNIVKTYGLWLRYDSRSGTHNMYKEYRDVTLNAAVRKMYADLASRHRARKSAVQIIRTAIVAGKDAK
A9P0B9________________VVGRSLPTPTDEHPKIFRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVQQMYDEMASRHRVRYPCIQIIKTATIPNELCK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain