SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene154674

Length: 410 nt

UniGene Fasta

>sp_v3.0_unigene154674
ATACTGCTGGACAAGAGCGCTTTCGATCTGTGACAAGAAGTTACTACCGAGGGGCTGCGGGTGCGCTTCTAGTTTATGACATTACGAGTCGAGAAAGTTACAACCACGTCTCCTCGTGGCTTGGCGACGCAAGAAGTCTTTCAAATCCGGACATCGTCATCGTCTTGGTTGGCAACAAAAAGGATTTGGAAAGTGAGCGTGAAGTGACTTTTCTTGAAGCAAGCCGTTTTGCTGAGGAAAACGACCTCTTATTCCTCGAAACTAGCGCTCTGTCAGGTGTCGGTGTTCACGAAGTGTTCATTAATTGCGCGAGAAATATTTTGGGGAAAATAGAAAGTGGGAAGCTTGATCCGGAAACAATGTGCTCGGGTGTCCAGCACGGTGATAATCGAAGTGTTAAAGACCTCAAA

Ace file of the UniGene sp_v3.0_unigene154674

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Small GTP-binding protein Rab4 n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9C4Y4_9EUKA	-	-	0.0	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Sma3	Rab11/RabA-family small GTPase	-	-	2.048e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Sphingomyelin phosphodiesterase.	EC:3.1.4.12	-	5.161e-11	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Sphingolipid metabolism	00600		5.161e-11	%
Sma3	Metabolic pathways	01100		5.161e-11	%

Source	Gene names
Sma3	40.t00003; AT4g17160; AT4g17170; AT4g35860; AT4g39990; At1g01200; At1g18200; At1g73640; At3g12160; At4g17160; At4g17170; At4g35860; At4g39990; At5g45750; At5g47960; CHLREDRAFT_148836; F25P22.5; F28J15.18; F6F3.1; GLRab; GSVIVT00004403001; GSVIVT0000884600

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	endoplasmic reticulum-Golgi intermediate compartment membrane	GO:0033116	Cellular Component	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	small GTPase mediated signal transduction	GO:0007264	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	GCK	IPR012891	-	-
Sma3		IPR013753	-	-
Sma3		IPR015595	-	-
Sma3		IPR015599	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G35860.1	ATRABB1B, ATGB2, ATRAB2C, GB2 GTP-binding 2 chr4:16987118-16988839 REVERSE LENGTH=211	1.99993e-41	54%
RefSeq	Arabidopsis thaliana	NP_001078499.1	GTP-binding protein GB2 [Arabidopsis thaliana]	6.99949e-42	54%
RefSeq	Populus trichocarpa	XP_002312839.1	predicted protein [Populus trichocarpa]	9.99967e-42	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NU85

Fln msg: Distance to subject end: 16 aas, your sequence is shorter than subject: 136 - 213

Fln protein: TAGQERFRSVTRSYYRGAAGALLVYDITSRESYNHVSSWLGDARSLSNPDIVIVLVGNKKDLESEREVTFLEASRFAEENDLLFLETSALSGVGVHEVFINCARNILGKIESGKLDPETMCSGVQHGDNRSVKDLK

Protein Length: 137

Fln nts: ATACTGCTGGACAAGAGCGCTTTCGATCTGTGACAAGAAGTTACTACCGAGGGGCTGCGGGTGCGCTTCTAGTTTATGACATTACGAGTCGAGAAAGTTACAACCACGTCTCCTCGTGGCTTGGCGACGCAAGAAGTCTTTCAAATCCGGACATCGTCATCGTCTTGGTTGGCAACAAAAAGGATTTGGAAAGTGAGCGTGAAGTGACTTTTCTTGAAGCAAGCCGTTTTGCTGAGGAAAACGACCTCTTATTCCTCGAAACTAGCGCTCTGTCAGGTGTCGGTGTTCACGAAGTGTTCATTAATTGCGCGAGAAATATTTTGGGGAAAATAGAAAGTGGGAAGCTTGATCCGGAAACAATGTGCTCGGGTGTCCAGCACGGTGATAATCGAAGTGTTAAAGACCTCAAA

Fln Alignment:

HLKU4M004H6A5A___TAGQERFRSVTRSYYRGAAGALLVYDITSRESYNHVSSWLGDARSLSNPDIVIVLVGNKKDLESEREVTFLEASRFAEENDLLFLETSALSGVGVHEVFINCARNILGKIESGKLDPETMCSGVQHG
A9NU85________________TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLATWLEDARQHANSNMTIMLIGNKCDLDHRRAVSTEEGAQFAKEHGLVFMETSAKTAQNVEEAFINTAAKIYQKIEEGIFDVSNETSGIKVG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain