SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene154545

Length: 118 nt

UniGene Fasta

>sp_v3.0_unigene154545
GAAGCAGCGCCATGGCCAAGGGCGTCAAGAAACATCTCAAGCGCCTGGCGGCTCCCCGCCACTGGATGCTCAACAAGCTGGGCGGCACCTTCGCCCCCAAGCCTTCTTCTGGTCCCCA

Ace file of the UniGene sp_v3.0_unigene154545

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S4 n=12 Tax=rosids RepID=RS4_GOSHI	-	-	1.0e-10	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	40S ribosomal protein S4	-	-	4.755e-17	-

Source	Gene names
Sma3	At2g17360; At5g07090; At5g58420; BiRP1; CHLREDRAFT_188837; F5J6.12; MICPUCDRAFT_36856; MICPUN_90851; MOJ9.26; MQJ2_10; OSTLU_18526; Os01g0358400; Os02g0105900; Os05g0368300; OsI_01884; OsI_05494; OsI_19685; OsJ_01737; OsJ_05027; OsJ_18278; Ot17g01370; P05

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	rRNA binding	GO:0019843	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S4e	IPR000876	-	-
Sma3	RNA-binding S4 domain	IPR002942	-	-
Sma3	KOW	IPR005824	-	-
Sma3	Ribosomal protein S4e, N-terminal	IPR013843	-	-
Sma3	Ribosomal protein S4e, central	IPR013845	-	-
Sma3	Ribosomal protein S4e, N-terminal, conserved site	IPR018199	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G17360.1	Ribosomal protein S4 (RPS4A) family protein chr2:7546598-7548138 FORWARD LENGTH=261	6.0e-16	82%
RefSeq	Arabidopsis thaliana	NP_001189539.1	40S ribosomal protein S4-1 [Arabidopsis thaliana]	5.0e-16	82%
RefSeq	Populus trichocarpa	XP_002308235.1	predicted protein [Populus trichocarpa]	8.0e-16	82%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNW1

Fln msg: Distance to subject end: 227 aas, your sequence is shorter than subject: 35 - 263

Fln protein: MAKGVKKHLKRLAAPRHWMLNKLGGTFAPKPSSGP

Protein Length: 36

Fln nts: GAAGCAGCGCC_-_ATGGCCAAGGGCGTCAAGAAACATCTCAAGCGCCTGGCGGCTCCCCGCCACTGGATGCTCAACAAGCTGGGCGGCACCTTCGCCCCCAAGCCTTCTTCTGGTCCCCA

Fln Alignment:

HLKU4M004IUJ43___MAKGVKKHLKRLAAPRHWMLNKLGGTFAPKPSSGP
A9NNW1________________MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSPGP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain