SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene154519

Length: 433 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene154519
GAAAGATGAAGAAGACTACTGGTGAAATTCTTGATGTCAATGAGATCACTGAGAAGAACACCAGATACGTCAAGAACTATGGCATTTGGGTCAAATACAACTCCAGAAGTGGAACCCATAATATGTACCGTGAATACAGAGATGTTAGCCTCACCAACGCTATCGATTCACTCTACAATGATATGGCTGGTCGTCATCGTGCTCGCAAGCAATCCATTCAAATTATCCGCACTGCTTCTGTCAAAGCTGCTTATTGCAAACGCCCCAACACCAAACAATTCCACGATTCCAAGTTGAGATTCCCACTTCCCCACAGAGTCATCCGCCCCTCAACCAAGGAGTTCAAGTCCACCTTCCTGGCAAATCGCCCTCAACTCATTTCGGTTAGACGGTCAATCTGTGAGTGAGTTAATAACACGACATGAGCGCATAC

Ace file of the UniGene sp_v3.0_unigene154519 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L18a putative n=1 Tax=Albugo laibachii Nc14 RepID=F0WM08_9STRA	-	-	1.00053e-42	68%
FL-Next	sp=60S ribosomal protein L18a; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Sma3	Ribosomal protein L18a	-	-	2.662e-13	-

Source	Gene names
Sma3	AT3G14600; At1g29965; At1g29970; At2g34480; At3g14600; CHLREDRAFT_146844; GSVIVT00003438001; GSVIVT00003441001; GSVIVT00005870001; MICPUN_57540; MIE1.10; OSJNBb0053D02.16; OSJNBb0063G05.12; Os01g0666900; Os01g0752300; Os05g0565000; OsI_03189; OsI_03756; O

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR002670	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G29965.1	Ribosomal protein L18ae/LX family protein chr1:10498458-10499373 REVERSE LENGTH=178	55%
RefSeq	Arabidopsis thaliana	NP_849729.1	Ribosomal protein L18ae/LX family protein [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002300869.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0B9

Fln msg: your sequence is shorter than subject: 135 - 178

Fln protein: KMKKTTGEILDVNEITEKNTRYVKNYGIWVKYNSRSGTHNMYREYRDVSLTNAIDSLYNDMAGRHRARKQSIQIIRTASVKAAYCKRPNTKQFHDSKLRFPLPHRVIRPSTKEFKSTFLANRPQLISVRRSICE*

Protein Length: 136

Fln nts: GAAAGATGAAGAAGACTACTGGTGAAATTCTTGATGTCAATGAGATCACTGAGAAGAACACCAGATACGTCAAGAACTATGGCATTTGGGTCAAATACAACTCCAGAAGTGGAACCCATAATATGTACCGTGAATACAGAGATGTTAGCCTCACCAACGCTATCGATTCACTCTACAATGATATGGCTGGTCGTCATCGTGCTCGCAAGCAATCCATTCAAATTATCCGCACTGCTTCTGTCAAAGCTGCTTATTGCAAACGCCCCAACACCAAACAATTCCACGATTCCAAGTTGAGATTCCCACTTCCCCACAGAGTCATCCGCCCCTCAACCAAGGAGTTCAAGTCCACCTTCCTGGCAAATCGCCCTCAACTCATTTCGGTTAGACGGTCAATCTGTGAGTGA___GTTAATAACACGACATGAGCGCATAC

Fln Alignment:

HLKU4M004IIL4T___KMKKTTGEILDVNEITEKNTRYVKNYGIWVKYNSRSGTHNMYREYRDVSLTNAIDSLYNDMAGRHRARKQSIQIIRTASVKAAYCKRPNTKQFHDSKLRFPLPHRVIRPSTKEFKSTFLANRPQL
A9P0B9________________KVKKSNGQILAINEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVQQMYDEMASRHRVRYPCIQIIKTATIPNELCKRENTKQFQDSKIKFPLVYRKVRPPTRKLKTTFKASRPNL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain