SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene154506

Length: 469 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene154506
CGGCCTACGCGCCGCTGGACGAGAGCCTGGCGCGCGCTGTGGTGGACATCTCGTCGCGCCCGTTCGCCGTGATCGACCTCAAGCTCAAGCGGGAGAAGATCGGAGAGCTCTCGTGCGAGATGATCCCTCACGTCCTTCACTCCTTCGCCACCAGCGCCAACCTCACGCTGCACGTTGAGGTCCTGTACGGTGCGAATGACCATCACAAGGCCGAATCGGCATTCAAGGCCACTGCGCTGGCCCTGCGCGAGGCTGTGACCAAGGACGGCCCCGCCGACGCCGTGCCCAGCACCAAGGGCGTACTCGAGTGACCATGATCGCGCCACCCCCGTCAAGCAACAGCAGAGAAGAGAAACAGAAAAGGGCGGCGTACAAGTACAATGTCGTGATCTGTTATTTTTGTAGGCCACACGCGAGCTGCAGTGCTTTCTCGCTCGTCCACTCTGGTGAAGAGAAGATTCGCTACGCA

Ace file of the UniGene sp_v3.0_unigene154506 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Imidazoleglycerol-phosphate dehydratase n=1 Tax=Malassezia globosa CBS 7966 RepID=A8Q9P0_MALGO	-	-	1.0e-35	75%
FL-Next	sp=Imidazoleglycerol-phosphate dehydratase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%

Source	Gene names
Sma3	HIS3; POPTRDRAFT_579056;

Source	GOs	Term	Type	Identity
Sma3	histidinol-phosphatase activity	GO:0004401	Molecular Function	-
Sma3	imidazoleglycerol-phosphate dehydratase activity	GO:0004424	Molecular Function	-
Sma3	histidine biosynthetic process	GO:0000105	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Imidazoleglycerol-phosphate dehydratase	IPR000807	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	HAD-superfamily hydrolase, subfamily IA, hypothetical 1	IPR006438	-	-
Sma3	Histidinol-phosphate phosphatase	IPR006543	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0A9

Fln msg: your sequence is shorter than subject: 103 - 314

Fln protein: AYAPLDESLARAVVDISSRPFAVIDLKLKREKIGELSCEMIPHVLHSFATSANLTLHVEVLYGANDHHKAESAFKATALALREAVTKDGPADAVPSTKGVLE*

Protein Length: 104

Fln nts: CGGCCTACGCGCCGCTGGACGAGAGCCTGGCGCGCGCTGTGGTGGACATCTCGTCGCGCCCGTTCGCCGTGATCGACCTCAAGCTCAAGCGGGAGAAGATCGGAGAGCTCTCGTGCGAGATGATCCCTCACGTCCTTCACTCCTTCGCCACCAGCGCCAACCTCACGCTGCACGTTGAGGTCCTGTACGGTGCGAATGACCATCACAAGGCCGAATCGGCATTCAAGGCCACTGCGCTGGCCCTGCGCGAGGCTGTGACCAAGGACGGCCCCGCCGACGCCGTGCCCAGCACCAAGGGCGTACTCGAGTGA___CCATGATCGCGCCACCCCCGTCAAGCAACAGCAGAGAAGAGAAACAGAAAAGGGCGGCGTACAAGTACAATGTCGTGATCTGTTATTTTTGTAGGCCACACGCGAGCTGCAGTGCTTTCTCGCTCGTCCACTCTGGTGAAGAGAAGATTCGCTACGCA

Fln Alignment:

HLKU4M004I5VOV___APLDESLARAVVDISSRPFAVIDLKLKREKIGELSCEMIPHVLHSFATSANLTLHVEVLYGANDHHKAESAFKATALALREAVTKD-GPADAVPSTKGVL
A9P0A9________________APLDEALVHVALDLSGRPYLGYDLCIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDTRRSGRIPSSKGVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain