SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene154500

Length: 454 nt

UniGene Fasta

>sp_v3.0_unigene154500
GCCAGGATTGGATTATATTCCACAGTTGCAAATTACAGGGAGTCCTAATTTAGCTTCATCGAACTATACGGGTGCAAGGTTACCTATGTACAATAATTATCTGCAGCGGCAACAACAACACCACGTGCTTGTTCAGCAACAGCCATCATCAACTAGCATCAGTGGATATGAAGAGTTATATAACATGGATGGGAAGTGTATTGCTCAGTCATCTGGGAACCTCCTGCCCACTTCTCAGTCCCGATCCAATTCCTGCGATAACCCGGACTACAATTCACTAATCATTCCTGCACATAATCGGCACTTCCGCAATCTTTGACTGAAGCGAAAGATTACGTACATAGCGAAAACTAGACTTTCTTCGATGTTATTCTGCGTGTACAGTTCTGGTTTACCATGAGTTCCGAGTGTAACGAGATAACTATGCTATTTTCATTCAGGTATCAGCTACCAG

Ace file of the UniGene sp_v3.0_unigene154500

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	6.0e-25	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	AP2/ERF domain	IPR001471	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P288

Fln msg: your sequence is shorter than subject: 106 - 429

Fln protein: PGLDYIPQLQITGSPNLASSNYTGARLPMYNNYLQRQQQHHVLVQQQPSSTSISGYEELYNMDGKCIAQSSGNLLPTSQSRSNSCDNPDYNSLIIPAHNRHFRNL*

Protein Length: 107

Fln nts: GCCAGGATTGGATTATATTCCACAGTTGCAAATTACAGGGAGTCCTAATTTAGCTTCATCGAACTATACGGGTGCAAGGTTACCTATGTACAATAATTATCTGCAGCGGCAACAACAACACCACGTGCTTGTTCAGCAACAGCCATCATCAACTAGCATCAGTGGATATGAAGAGTTATATAACATGGATGGGAAGTGTATTGCTCAGTCATCTGGGAACCTCCTGCCCACTTCTCAGTCCCGATCCAATTCCTGCGATAACCCGGACTACAATTCACTAATCATTCCTGCACATAATCGGCACTTCCGCAATCTTTGA___CTGAAGCGAAAGATTACGTACATAGCGAAAACTAGACTTTCTTCGATGTTATTCTGCGTGTACAGTTCTGGTTTACCATGAGTTCCGAGTGTAACGAGATAACTATGCTATTTTCATTCAGGTATCAGCTACCAG

Fln Alignment:

HLKU4M004ICKDK___PGLDYIPQLQITGSPNLASSNYTGARLPMYNNYXXXXXXXXXXXXXXPSSTSISGYEELYNMDGKCIAQSSGNLLPTSQSRSNSCDNPDYNSLIIPAHNRHFRNL
A9P288________________PGLDYIRQLQYTGRPNLASSNYTGARLPTYNNYVLQQQQQHVLIHQQQPSISTTGYQEVSNLDGNFIDQTSGNLLPTAQSQAKYYDNSGYNSVALPANNWHCPNL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain