SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene154483

Length: 377 nt

UniGene Fasta

>sp_v3.0_unigene154483
ATCGTCTCCGCCCTTTGTCTTACGCCAACGCCAACGTCTTCCTCGTCTGCTTCTCCGTTGTCAACCCCGTTTCCTACGAAAACGTGACCGCCAAGTGGATTCCTGAGGTCTCGCACTTCTGCCCAGCCGTCCCACAGATCCTCGTCGGAACCAAGCTCGATCTCCGCGAAGACCCTGGTATCCGCGAGAAGCTCTCCAACCAAAATCAGCAGCCAGTCTCCACTGAGCAAGGTAACGAGCTGTCCAAGCGCATCAAGGCGATCAAGTATATGGAATGCTCTGCGAAGACCAGCCAAGGTCTCAAGGCTGTTTTTGACGAAGCTGTCAAGGCTGTTCTCTTTGCCAAGCCCAAGAAATCGGGTGGCTGCACTCTCTTG

Ace file of the UniGene sp_v3.0_unigene154483

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rho GTPase n=1 Tax=Polysphondylium pallidum RepID=D3BBX9_POLPA	-	-	0.0	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	Rac gtpase, putative	-	-	2.295e-19	-

Source	ECs	Term	Type	e value	Identity
Sma3	Sphingomyelin phosphodiesterase.	EC:3.1.4.12	-	1.738e-11	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Sphingolipid metabolism	00600		1.738e-11	%
Sma3	Metabolic pathways	01100		1.738e-11	%

Source	Gene names
Sma3	ARAC1; ARAC10; ARAC11; ARAC2; ARAC3; ARAC4; ARAC5; ARAC6; ARAC7; ARAC8; ATGP2; ATGP3; At1g20090; At2g17800; At3g48040; At4g28950; At4g35020; At5g45970; At5g62880; F25O24.70; GSVIVT00014385001; GSVIVT00016143001; GSVIVT00016714001; GSVIVT00018684001; GSVIV

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	spindle	GO:0005819	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	phragmoplast	GO:0009524	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	site of polarized growth	GO:0030427	Cellular Component	-
Sma3	apical part of cell	GO:0045177	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	small GTPase mediated signal transduction	GO:0007264	Biological Process	-
Sma3	negative regulation of abscisic acid mediated signaling pathway	GO:0009788	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	Small GTPase superfamily, Rho type	IPR003578	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3		IPR013753	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G35020.1	ARAC3, ROP6, RHO1PS, ATROP6, RAC3 RAC-like 3 chr4:16673176-16674540 FORWARD LENGTH=198	6.0e-38	53%
RefSeq	Arabidopsis thaliana	NP_001190917.1	Rac-like GTP-binding protein ARAC3 [Arabidopsis thaliana]	8.0e-38	53%
RefSeq	Populus trichocarpa	XP_002326847.1	predicted protein, partial [Populus trichocarpa]	1.0e-36	54%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A849

Fln msg: STOP codon was not found. Distance to subject end: 0 aas, your sequence is shorter than subject: 125 - 196

Fln protein: RLRPLSYANANVFLVCFSVVNPVSYENVTAKWIPEVSHFCPAVPQILVGTKLDLREDPGIREKLSNQNQQPVSTEQGNELSKRIKAIKYMECSAKTSQGLKAVFDEAVKAVLFAKPKKSGGCTLL

Protein Length: 126

Fln nts: ATCGTCTCCGCCCTTTGTCTTACGCCAACGCCAACGTCTTCCTCGTCTGCTTCTCCGTTGTCAACCCCGTTTCCTACGAAAACGTGACCGCCAAGTGGATTCCTGAGGTCTCGCACTTCTGCCCAGCCGTCCCACAGATCCTCGTCGGAACCAAGCTCGATCTCCGCGAAGACCCTGGTATCCGCGAGAAGCTCTCCAACCAAAATCAGCAGCCAGTCTCCACTGAGCAAGGTAACGAGCTGTCCAAGCGCATCAAGGCGATCAAGTATATGGAATGCTCTGCGAAGACCAGCCAAGGTCTCAAGGCTGTTTTTGACGAAGCTGTCAAGGCTGTTCTCTTTGCCAAGCCCAAGAAATCGGGTGGCTGCACTCTCTTG

Fln Alignment:

HLKU4M004IGLSB___RLRPLSYANANVFLVCFSVVNPVSYENVTAKWIPEVSHFCPAVPQILVGTKLDLREDPGIREKLSNQNQQPVSTEQGNELSKRIKAIKYMECSAKTSQGLKAVFDEAVKAVL-----FAKPKKSGGCTLL
D5A849________________RLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPNVPIILVGTKLDLRDDK--QFFADHPGAAPITTPQGEELKKQIGAAAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKRRKKQKNCSIL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain