SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene154436

Length: 565 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene154436
AAGGCTGGTAAATGGGCTGTTCCTATTGAAAAGGTCAAGGCTATGTCTGAAGCTGAAATGTTCCAAGTCTTAAAGACTGGTAAAAGACAAGCCAAGGCCTGGAAGAGAAAGATTAATAAATTCACCTTCGTCGGAGATAACTTCACCAGAAAGCCTCCCAAGTACGAAAGATTCATCAGACCTTCCAGTTTGAGAATGAAGAAGGCTCACGTTACTCATCCCGAGCTTAAAACTACCTTCTTCTTGGATATATTGGGTGTTAAGAAGAACCCTCAATCCGCTTTATATACAAACTTGGGTGTTATCACTAAGGGTGCCGTCCTTGAAGTCAATGTGAGTGAATTGGGTTTGGTTACACAAACTGGTAAAGTCGTCTGGAGTAAATATGCTCAAGTCACAAATAACCCCGAAAATGATGGTTGCATTAATGCAGTTTTACTTGTATAATCTCAAAGTATATTCTGTATGATTTTAAGGATTAGTATTAGTATGACCTGTTCAATTTCGTAATAGTCATTTTATATTTTCTATACAAATAAACAATGACTGGCATGCTGCAATAATT

Ace file of the UniGene sp_v3.0_unigene154436 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein S8e containing protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CB679	-	-	0.0	83%
FL-Next	tr=Singapore isolate B (sub-type 7) whole genome shotgun sequence assembly, scaffold_5; Blastocystis hominis.	-	-	0.0	77%

Source	Gene names
Sma3	At5g06360; CHLREDRAFT_135480; GSVIVT00038895001; LCI30; MICPUCDRAFT_44560; MICPUN_62565; OSTLU_47791; Os07g0673100; OsI_27295; OsJ_25542; Ot17g02500; P0470D12.138; PHATRDRAFT_12394; PHYPADRAFT_217036; POPTRDRAFT_576508; POPTRDRAFT_667616; POPTRDRAFT_81392

Source	GOs	Term	Type	e value	Identity
Sma3	intracellular	GO:0005622	Cellular Component	0.0	-
Sma3	ribosome	GO:0005840	Cellular Component	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S8e	IPR001047	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	SPX, N-terminal	IPR004331	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G06360.1	Ribosomal protein S8e family protein chr5:1944835-1946512 FORWARD LENGTH=260	71%
RefSeq	Arabidopsis thaliana	NP_196254.1	Ribosomal protein S8e family protein [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002308319.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D8M881

Fln msg: your sequence is shorter than subject: 149 - 200

Fln protein: KAGKWAVPIEKVKAMSEAEMFQVLKTGKRQAKAWKRKINKFTFVGDNFTRKPPKYERFIRPSSLRMKKAHVTHPELKTTFFLDILGVKKNPQSALYTNLGVITKGAVLEVNVSELGLVTQTGKVVWSKYAQVTNNPENDGCINAVLLV*

Protein Length: 150

Fln nts: AAGGCTGGTAAATGGGCTGTTCCTATTGAAAAGGTCAAGGCTATGTCTGAAGCTGAAATGTTCCAAGTCTTAAAGACTGGTAAAAGACAAGCCAAGGCCTGGAAGAGAAAGATTAATAAATTCACCTTCGTCGGAGATAACTTCACCAGAAAGCCTCCCAAGTACGAAAGATTCATCAGACCTTCCAGTTTGAGAATGAAGAAGGCTCACGTTACTCATCCCGAGCTTAAAACTACCTTCTTCTTGGATATATTGGGTGTTAAGAAGAACCCTCAATCCGCTTTATATACAAACTTGGGTGTTATCACTAAGGGTGCCGTCCTTGAAGTCAATGTGAGTGAATTGGGTTTGGTTACACAAACTGGTAAAGTCGTCTGGAGTAAATATGCTCAAGTCACAAATAACCCCGAAAATGATGGTTGCATTAATGCAGTTTTACTTGTATAA___TCTCAAAGTATATTCTGTATGATTTTAAGGATTAGTATTAGTATGACCTGTTCAATTTCGTAATAGTCATTTTATATTTTCTATACAAATAAACAATGACTGGCATGCTGCAATAATT

Fln Alignment:

HLKU4M004JI1F8___KAGKWAVPIEKVKAMSEAEMFQVLKTGKRQAKAWKRKINKFTFVGDNFTRKPPKYERFIRPSSLRMKKAHVTHPELKTTFFLDILGVKKNPQSALYTNLGVITKGAVLEVNVSELGLVTQTGKVVWSKYAQVTNNPENDGCINAVLLV
D8M881________________KAGKWTVPVPKVNPIADAEMFRVLSTGKRKQKQWKRMITKVTFVGEGFTRKPPKYERFVRPTGLRFKKAHVTHPELKTTFYLDIIGVKKNPQSKLYTELGVITKGTIIEVNVSELGLVTESGKVVWGKYAQVTNNPENDGCINAILLV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain