SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene154424

Length: 181 nt

UniGene Fasta

>sp_v3.0_unigene154424
AGTCATGTCAGGAGTGTGCTATGCTTTTCAAAGAGGGGAGTGTGAGAGAGGATCAAGTTGCAGATTCTCTCATGAGGGTGGAGCCAGTGGTGGTGCCTCATTCAGTAACTTTGGTGGTAAGAAACGCGGAGGTGTCTGCTATGCTTTCCAAAGAGGTGAATGTGATCGTGGTGATAGCTGT

Ace file of the UniGene sp_v3.0_unigene154424

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Zinc finger CCCH domain-containing protein 42; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	47%

Source	Gene names
Sma3	MICPUCDRAFT_51775; OSTLU_32335; Ot06g04240;

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	mismatched DNA binding	GO:0030983	Molecular Function	-
Sma3	mismatch repair	GO:0006298	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	DNA mismatch repair protein	IPR002099	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	DNA mismatch repair protein, C-terminal	IPR013507	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	DNA mismatch repair, conserved site	IPR014762	-	-
Sma3	DNA mismatch repair protein, N-terminal	IPR014763	-	-
Sma3	MutL, C-terminal, dimerisation	IPR014790	-	-
Sma3	Post Meiotic Segregation 2	IPR015434	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G47120.1	RNA recognition motif (RRM)-containing protein chr3:17351334-17352769 REVERSE LENGTH=352	3.0e-13	47%
RefSeq	Arabidopsis thaliana	NP_190296.1	RNA-binding motif protein, X-linked 2 [Arabidopsis thaliana]	3.0e-13	47%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SD61

Fln msg: Distance to subject end: 152 aas, your sequence is shorter than subject: 60 - 352

Fln protein: VMSGVCYAFQRGECERGSSCRFSHEGGASGGASFSNFGGKKRGGVCYAFQRGECDRGDSC

Protein Length: 61

Fln nts: AGTCATGTCAGGAGTGTGCTATGCTTTTCAAAGAGGGGAGTGTGAGAGAGGATCAAGTTGCAGATTCTCTCATGAGGGTGGAGCCAGTGGTGGTGCCTCATTCAGTAACTTTGGTGGTAAGAAACGCGGAGGTGTCTGCTATGCTTTCCAAAGAGGTGAATGTGATCGTGGTGATAGCTGT

Fln Alignment:

HLKU4M004IC0CM___GVCYAFQRGECERGSSCRFSHE----------XXXXXXXXXXXXXXKKRGGVCYAFQRGECDRGDSC
Q9SD61________________GVCRAFQRGECTRGDSCKFSHDEKRAANTGWGHEEDRSSKWDHDKNREGRGVCRAFQRGECTRGDSC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain