SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene154396

Length: 338 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene154396
GGGAAATGTTCATTTCCGGACAAAACCAGAGGAACTGCAGGAGCACTTCAAAGATGCGGGAACCATCAATCGCGTTACTATTCTTGTCGACAAGTTTACAGGCCAGCCGAAGGGATTCGCGTACGTAGAGTTTGACAGCGAGGCGTGCGTCGCAAAGGCGCTCGCGCTCGAGGGCTCCATGCTGCACGGGCGGCCACTGAAGGTGGTGCCCAAGCGGACAAACGTTCCGCGCTTCCAGCTGCCCGGCCGGCGTCCCTCGCCGCGGAGTAGATACCCCATGTACCGCCCGCGCCGCCGCCCTCACTACAACCCCTACGGTTACCAGTGAACCTGATACT

Ace file of the UniGene sp_v3.0_unigene154396 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyadenylate-binding protein 2 n=1 Tax=Schizosaccharomyces pombe 972h- RepID=PAB2_SCHPO	-	-	1.0e-22	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	Polyadenylate-binding protein 2	-	-	1.017e-14	-

Source	Gene names
Sma3	At5g10350; At5g51120; At5g65260; CHLREDRAFT_112590; F12B17_300; GSVIVT00006170001; GSVIVT00010215001; GSVIVT00013349001; GSVIVT00014106001; MICPUCDRAFT_58709; MQN23.20; OSTLU_7571; Os02g0757900; Os06g0219600; OsI_09006; OsI_22184; OsJ_08453; OsJ_20615; P0

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	poly(A) RNA binding	GO:0008143	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G10350.1	RNA-binding (RRM/RBD/RNP motifs) family protein chr5:3255674-3257746 REVERSE LENGTH=217	3.0e-25	65%
RefSeq	Arabidopsis thaliana	NP_850803.1	RNA recognition motif-containing protein [Arabidopsis thaliana]	3.0e-25	65%
RefSeq	Populus trichocarpa	XP_002309968.1	predicted protein [Populus trichocarpa]	1.0e-26	67%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTT0

Fln msg: your sequence is shorter than subject: 109 - 201

Fln protein: GNVHFRTKPEELQEHFKDAGTINRVTILVDKFTGQPKGFAYVEFDSEACVAKALALEGSMLHGRPLKVVPKRTNVPRFQLPGRRPSPRSRYPMYRPRRRPHYNPYGYQ*

Protein Length: 110

Fln nts: GGGAAATGTTCATTTCCGGACAAAACCAGAGGAACTGCAGGAGCACTTCAAAGATGCGGGAACCATCAATCGCGTTACTATTCTTGTCGACAAGTTTACAGGCCAGCCGAAGGGATTCGCGTACGTAGAGTTTGACAGCGAGGCGTGCGTCGCAAAGGCGCTCGCGCTCGAGGGCTCCATGCTGCACGGGCGGCCACTGAAGGTGGTGCCCAAGCGGACAAACGTTCCGCGCTTCCAGCTGCCCGGCCGGCGTCCCTCGCCGCGGAGTAGATACCCCATGTACCGCCCGCGCCGCCGCCCTCACTACAACCCCTACGGTTACCAGTGA___ACCTGATACT

Fln Alignment:

HLKU4M004JZ6EN___GNVHFRTKPEELQEHFKDAGTINRVTILVDKFTGQPKGFAYVEFDSEACVAKALALEGSMLHGRPLKVVPKRTNVP
C0PTT0________________GNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGYAYVEFLEAEAVQNAILLNESELHGRQLKVTAKRTNVP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain