SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene154375

Length: 458 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene154375
CATCATCACAATGCGCTCAGTACTACGCGCAAAGCTGGAGGAGCTCGAGACTCCTGGCACCTGGAACCATATCACAGATCAAATTGGCATGTTTAGCTTCACCGGCCTGAGCGAGGCCCAAGTTATGAAGCTCCGGTCGGAGGCTCATGTCTACATGACCAAGAACGGTCGCATCAGTATGGCCGGCCTCAACGATGGCAATGTCGAGTACTTTGCCAAGGCGGTTGACAAGGTTGTTCGTGAATCTGCAGAATAAATGAAGTGTGTTCGGATCGTTTTGTATGGCTTATGAAAGGTCACTTACAAGACCCCGGTTTTGGCGTTTGGGAAACAATCATTTCACTTACCTATGGCGGGGTCTCTACGAAAAGTATTGGACGATCCTCTCTATATCATTATCTAATATACATAACCTGATATGATATCTATCTTATCTCAACATGGGTTTTATCTTGTCC

Ace file of the UniGene sp_v3.0_unigene154375 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aspartate aminotransferase n=1 Tax=Glomerella graminicola M1.001 RepID=E3QIP2_COLGM	-	-	1.0e-33	87%
FL-Next	sp=Aspartate aminotransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Sma3	Aspartate aminotransferase	-	-	9.914e-35	-

Source	ECs	Term	Type	e value	Identity
Sma3	Aspartate transaminase.	EC:2.6.1.1	-	1.21801e-41	-

Source	KEGGs	Term	e value	Identity
Sma3	Alanine, aspartate and glutamate metabolism	00250	1.21801e-41	%
Sma3	Cysteine and methionine metabolism	00270	1.21801e-41	%
Sma3	Arginine and proline metabolism	00330	1.21801e-41	%
Sma3	Tyrosine metabolism	00350	1.21801e-41	%
Sma3	Phenylalanine metabolism	00360	1.21801e-41	%
Sma3	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	1.21801e-41	%
Sma3	Carbon fixation in photosynthetic organisms	00710	1.21801e-41	%
Sma3	Isoquinoline alkaloid biosynthesis	00950	1.21801e-41	%
Sma3	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	1.21801e-41	%
Sma3	Biosynthesis of phenylpropanoids	01061	1.21801e-41	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	1.21801e-41	%
Sma3	Biosynthesis of plant hormones	01070	1.21801e-41	%
Sma3	Metabolic pathways	01100	1.21801e-41	%
Sma3	Biosynthesis of secondary metabolites	01110	1.21801e-41	%

Source	Gene names
Sma3	AAT; ASP1; ASP4; AST4; At1g62800; At2g30970; CHLREDRAFT_126943; F7F1.18; GSVIVT00018772001; GSVIVT00032463001; OJ1077_A12.15; OSJNBa0016D02.34; OSTLU_31597; Os02g0236000; Os06g0548000; OsI_06490; OsI_23308; OsJ_06017; OsJ_21631; Ot05g01290; PHYPADRAFT_169

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	L-aspartate:2-oxoglutarate aminotransferase activity	GO:0004069	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	cellular amino acid metabolic process	GO:0006520	Biological Process	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aspartate/other aminotransferase	IPR000796	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Aminotransferase, class I/classII	IPR004839	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G30970.1	ASP1 aspartate aminotransferase 1 chr2:13179012-13181686 FORWARD LENGTH=430	2.0e-23	54%
RefSeq	Arabidopsis thaliana	NP_180654.1	aspartate aminotransferase [Arabidopsis thaliana]	2.0e-23	54%
RefSeq	Populus trichocarpa	XP_002321073.1	predicted protein [Populus trichocarpa]	8.0e-24	57%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUJ0

Fln msg: your sequence is shorter than subject: 85 - 431

Fln protein: IITMRSVLRAKLEELETPGTWNHITDQIGMFSFTGLSEAQVMKLRSEAHVYMTKNGRISMAGLNDGNVEYFAKAVDKVVRESAE*

Protein Length: 86

Fln nts: CATCATCACAATGCGCTCAGTACTACGCGCAAAGCTGGAGGAGCTCGAGACTCCTGGCACCTGGAACCATATCACAGATCAAATTGGCATGTTTAGCTTCACCGGCCTGAGCGAGGCCCAAGTTATGAAGCTCCGGTCGGAGGCTCATGTCTACATGACCAAGAACGGTCGCATCAGTATGGCCGGCCTCAACGATGGCAATGTCGAGTACTTTGCCAAGGCGGTTGACAAGGTTGTTCGTGAATCTGCAGAATAA___ATGAAGTGTGTTCGGATCGTTTTGTATGGCTTATGAAAGGTCACTTACAAGACCCCGGTTTTGGCGTTTGGGAAACAATCATTTCACTTACCTATGGCGGGGTCTCTACGAAAAGTATTGGACGATCCTCTCTATATCATTATCTAATATACATAACCTGATATGATATCTATCTTATCTCAACATGGGTTTTATCTTGTCC

Fln Alignment:

HLKU4M004I9CGU___IITMRSVLRAKLEELETPGTWNHITDQIGMFSFTGLSEAQVMKLRSEAHVYMTKNGRISMAGLNDGNVEYFAKAVDKVVRESAE*MK
A9NUJ0________________IIGMREALRGNLENLGSPLSWNHVTDQIGMFCYSGMTPEQVDRLTSEFHIYLTRNGRISMAGVTTGNVEYLANAIHEVTKSSEKELK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain