SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene154348

Length: 500 nt

UniGene Fasta

>sp_v3.0_unigene154348
ATCAAATACGGCAGAGTTGTTATCCTTCTCCACGGCAGACACGCTGGCAAGAAGGCTGTTGTTGTCAAGTCCTCAGATGACGGCACCAAGGACAGAAAGTTCGGTCATGCTCTTGTCGCTGGTATCAGCAAGTACCCTAAGAAGGTTATCAAGCTCATGGGAAGCAAGAAGATCAAGAAACGTACTAAAGTCACTCCTTTCATTAAGCACGTCAATCTCAATCACCTCTTGCCAACCAGATACCAAATCAGCGGCGAACTCGATTTGAAGAGCATTATCACTGACGAAGGTCTTGAGAGCAGAGACAAGAAGCAAGAGACCAAGAAGAAACTGAAACTTTACCTCCAAGATAAATACGTTTCTCTTCCTGAGGTCAAGGGACCAAATGACAAAACCTCTCATGTCAAATTCCTGTTCAAGAAGCTTAGATTCTAAAAGGGTGCAATAGTAATTAGCAGCTAAATCACTTCAATGTTCTATTGAATTCCTATCCATATTCC

Ace file of the UniGene sp_v3.0_unigene154348

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L27 n=1 Tax=Phytophthora infestans T30-4 RepID=D0MZQ7_PHYIT	-	-	1.0e-27	47%
FL-Next	sp=60S ribosomal protein L27; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	60S ribosomal protein L27	-	-	7.171e-28	-

Source	Gene names
Sma3	At3g22230; At4g15000; GSVIVT00025743001; GSVIVT00030172001; MKA23.13; PHATRDRAFT_17846; PHYPADRAFT_165124; PHYPADRAFT_187092; RCOM_1576060; RPL27B; RPL27C; Rpl27; THAPSDRAFT_30154; VITISV_032808;

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L27e	IPR001141	-	-
Sma3	KOW	IPR005824	-	-
Sma3	Ribosomal protein L27e, conserved site	IPR018262	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G22230.1	Ribosomal L27e protein family chr3:7844136-7844543 REVERSE LENGTH=135	3.0e-32	53%
RefSeq	Arabidopsis thaliana	NP_188862.1	60S ribosomal protein L27-2 [Arabidopsis thaliana]	4.0e-32	53%
RefSeq	Populus trichocarpa	XP_002323180.1	predicted protein [Populus trichocarpa]	1.0e-30	52%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABK8

Fln msg: atg_distance in limit (1-15): atg_distance = 5, W2: There is no M at the beginning,

Fln protein: IKYGRVVILLHGRHAGKKAVVVKSSDDGTKDRKFGHALVAGISKYPKKVIKLMGSKKIKKRTKVTPFIKHVNLNHLLPTRYQISGELDLKSIITDEGLESRDKKQETKKKLKLYLQDKYVSLPEVKGPNDKTSHVKFLFKKLRF*

Protein Length: 146

Fln nts: ATCAAATACGGCAGAGTTGTTATCCTTCTCCACGGCAGACACGCTGGCAAGAAGGCTGTTGTTGTCAAGTCCTCAGATGACGGCACCAAGGACAGAAAGTTCGGTCATGCTCTTGTCGCTGGTATCAGCAAGTACCCTAAGAAGGTTATCAAGCTCATGGGAAGCAAGAAGATCAAGAAACGTACTAAAGTCACTCCTTTCATTAAGCACGTCAATCTCAATCACCTCTTGCCAACCAGATACCAAATCAGCGGCGAACTCGATTTGAAGAGCATTATCACTGACGAAGGTCTTGAGAGCAGAGACAAGAAGCAAGAGACCAAGAAGAAACTGAAACTTTACCTCCAAGATAAATACGTTTCTCTTCCTGAGGTCAAGGGACCAAATGACAAAACCTCTCATGTCAAATTCCTGTTCAAGAAGCTTAGATTCTAA___AAGGGTGCAATAGTAATTAGCAGCTAAATCACTTCAATGTTCTATTGAATTCCTATCCATATTCC

Fln Alignment:

HLKU4M004IZMLS___IKYGRVVILLHGRHAGKKAVVVKSSDDGTKDRKFGHALVAGISKYPKKVIKLMGSKKIKKRTKVTPFIKHVNLNHLLPTRYQISGELDLKSIITDEGLESRD
D5ABK8________________LKQNKVVVLLQGRFAGRKAVIVKNFDDGTAGRAYGHCLVAGIAKYPKKVIRKDSAKKTAKKSRLKAFIKVVNYNHIMPTRYSL--DVDLKNVVTFDKLETRD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain