SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene154278

Length: 242 nt

UniGene Fasta

>sp_v3.0_unigene154278
CTTATTACAACTTACCAAGAGATTAATATCACTATCTCGTCAGTACCGTTGCTAGAATGACAAACCCAAAAGGTTATCGTCGTGGTACTCGTCACTTATTTGCTCGAGATTTTAAGAAAAATGGACGAATTCCTTTGGCTACCTATATGAAAATCTATAAACGTGGTGACATTGTCGATATTAAAGGCAATGGTGCTGTACAAAAAGGTATGCCACATCGATATTATCATGGTAAAACCGGT

Ace file of the UniGene sp_v3.0_unigene154278

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L21 (Fragment) n=1 Tax=Echinorhynchus truttae RepID=B7FDN5_9BILA	-	-	6.0e-24	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%

Source	Gene names
Sma3	At1g09590; At1g09690; At1g57660; At1g57860; CHLREDRAFT_24354; F14J9.25; F21M12.8; GSVIVT00006241001; GSVIVT00025419001; GSVIVT00025430001; LOC_Os03g04750; LOC_Os10g32820; OSJNBa0006L06.3; Os03g0141000; Os10g0465800; OsI_09955; OsI_33947; OsJ_09354; OsJ_31

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L21e	IPR001147	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Pre-mRNA-splicing factor 19	IPR013915	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Ribosomal protein L21e, conserved site	IPR018259	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G57860.1	Translation protein SH3-like family protein chr1:21430034-21430827 REVERSE LENGTH=164	8.0e-21	61%
RefSeq	Arabidopsis thaliana	NP_564726.1	60S ribosomal protein L21-2 [Arabidopsis thaliana]	1.0e-20	61%
RefSeq	Populus trichocarpa	XP_002304624.1	predicted protein [Populus trichocarpa]	2.0e-21	66%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLM4

Fln msg: Distance to subject end: 103 aas, your sequence is shorter than subject: 62 - 165

Fln protein: MTNPKGYRRGTRHLFARDFKKNGRIPLATYMKIYKRGDIVDIKGNGAVQKGMPHRYYHGKTG

Protein Length: 63

Fln nts: CTTATTACAACTTACCAAGAGATTAATATCACTATCTCGTCAGTACCGTTGCTAGA_-_ATGACAAACCCAAAAGGTTATCGTCGTGGTACTCGTCACTTATTTGCTCGAGATTTTAAGAAAAATGGACGAATTCCTTTGGCTACCTATATGAAAATCTATAAACGTGGTGACATTGTCGATATTAAAGGCAATGGTGCTGTACAAAAAGGTATGCCACATCGATATTATCATGGTAAAACCGGT

Fln Alignment:

HLKU4M004H3VTQ___GYRRGTRHLFARDFKKNGRIPLATYMKIYKRGDIVDIKGNGAVQKGMPHRYYHGKTG
A9NLM4________________GVRARTRDLFARPFRKKGYAPLSTYLRSYKIGQYVDIKVNGSIHKGMPHKFYHGRTG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain