SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene154277

Length: 254 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene154277
CCTCCATCTGCGTCAACGCGGTGACGTGGCAATTCTACATAGGCGGCGTGATCAAGCACATCTGCGGACCGAACGAGTACAAGGACCTCGACCACTGCGTGCAGCTCGTGGGCTACGGCGACGACCTGGTCGGCACGCCCTACTGGCTCATCCGCAACTCGTGGGGCGAACTGTGGGGCGAGCTGGGCTACCTGAAGGTGGAGCGCAACAAGAACCTCTGCGGCGTGGCGGACGAGGTGACAACTTGCGACGTG

Ace file of the UniGene sp_v3.0_unigene154277 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cysteine protease n=1 Tax=Dictyostelium discoideum RepID=Q54F16_DICDI	-	-	1.0e-17	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%

Source	Gene names
Sma3	CYP-3; CYS3;

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	cysteine-type endopeptidase activity	GO:0004197	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase C1A, papain C-terminal	IPR000668	-	-
Sma3	Peptidase C1A, papain	IPR013128	-	-
Sma3	Proteinase inhibitor I29, cathepsin propeptide	IPR013201	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002313770.1	predicted protein [Populus trichocarpa]	4.0e-18	46%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PS89

Fln msg: STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 84 - 366

Fln protein: SICVNAVTWQFYIGGVIKHICGPNEYKDLDHCVQLVGYGDDLVGTPYWLIRNSWGELWGELGYLKVERNKNLCGVADEVTTCDV

Protein Length: 85

Fln nts: CCTCCATCTGCGTCAACGCGGTGACGTGGCAATTCTACATAGGCGGCGTGATCAAGCACATCTGCGGACCGAACGAGTACAAGGACCTCGACCACTGCGTGCAGCTCGTGGGCTACGGCGACGACCTGGTCGGCACGCCCTACTGGCTCATCCGCAACTCGTGGGGCGAACTGTGGGGCGAGCTGGGCTACCTGAAGGTGGAGCGCAACAAGAACCTCTGCGGCGTGGCGGACGAGGTGACAACTTGCGACGTG

Fln Alignment:

HLKU4M004JM2J7___SICVNAVTWQFYIGGV-IKHICGPNEYKDLDHCVQLVGYGDD------LVGTPYWLIRNSWGELWGELGYLKVERNKNLCGVADEVTT
C0PS89________________SVGINAAFMQTYVGGVSCPYVCSK---RNLDHGVLLVGYGAAAFAPIRMKDKPYWVIKNSWGPNWGENGYYKLCRGHNVCGINNMVST

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain