SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene154259

Length: 336 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene154259
GTCAATCTACGGTTTGATTTATTCTGTCATTGTACTCGCAGCCACCAGTGCACCTGATTATTCTGCATCCAGAGGATATGCTCAATTTGTTGGAGGTTTGACTGTAGGTTTTTGCTGCCTTGCTTCTGGTGTTGCAGTTGGAATTGTAGGAAAATCTGGACTTGCATCAATTGCAGAAAACAAGACTTGTGCTGTGAAGATGGTTTTAAACTTGATATTTTGTGAAGCTTTAGGTCTTTATGGTCTTATCTTTGGATTGATTGCTGCAACAACCTTTTAAAATCTATGTATTATTGTATAATATTAATCATTCATCTTAGAGAATGAGTTTCAAAT

Ace file of the UniGene sp_v3.0_unigene154259 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Vacuolar ATP synthase n=1 Tax=Heterocapsa triquetra RepID=Q5ENL0_HETTR	-	-	5.0e-18	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	proton-transporting V-type ATPase, V0 domain	GO:0033179	Cellular Component	-
Sma3	hydrogen ion transmembrane transporter activity	GO:0015078	Molecular Function	-
Sma3	ATP synthesis coupled proton transport	GO:0015986	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, V0 complex, proteolipid subunit C	IPR000245	-	-
Sma3	ATPase, F0/V0 complex, subunit C	IPR002379	-	-
Sma3	ATPase, V0 complex, proteolipid subunit C, eukaryotic	IPR011555	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NL02

Fln msg: your sequence is shorter than subject: 93 - 165

Fln protein: SIYGLIYSVIVLAATSAPDYSASRGYAQFVGGLTVGFCCLASGVAVGIVGKSGLASIAENKTCAVKMVLNLIFCEALGLYGLIFGLIAATTF*

Protein Length: 94

Fln nts: GTCAATCTACGGTTTGATTTATTCTGTCATTGTACTCGCAGCCACCAGTGCACCTGATTATTCTGCATCCAGAGGATATGCTCAATTTGTTGGAGGTTTGACTGTAGGTTTTTGCTGCCTTGCTTCTGGTGTTGCAGTTGGAATTGTAGGAAAATCTGGACTTGCATCAATTGCAGAAAACAAGACTTGTGCTGTGAAGATGGTTTTAAACTTGATATTTTGTGAAGCTTTAGGTCTTTATGGTCTTATCTTTGGATTGATTGCTGCAACAACCTTTTAA___AATCTATGTATTATTGTATAATATTAATCATTCATCTTAGAGAATGAGTTTCAAAT

Fln Alignment:

HLKU4M004JCQPD___IYGLIYSVIVLAATS--APDYSASRGYAQFVGGLTVGFCCLASGVAVGIVGKSGLASIAENKTCAVKMVLNLIFCEALGLYGLIFGLIAAT
A9NL02________________IYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLSGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain