SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene154245

Length: 567 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene154245
CGGCTACGACCGCGCCGCGCCACACGGTACCGGCGCCGCCAAGGTCGGTGGCAACTACGCCGCCAGCCTGCTGCCAGGTTCCGAAGCGAAAAAAGCCGGCTTCGCCGACAGCATCTACCTGGACCCGGCCACGCACTCGAAGATCGAGGAAGTCGGTTCGGCCAACTTCTTCGGGATCACCCGAGACAACAAGTTCATCACGCCGAAGTCGCCTTCGGTACTGCCAGGCATCACCCGCATGTCGCTGATCGAACTGGCCAAGACCCGCCTGGGCCTGGAAGTGGTCGAAGGCGAAGTGTTCATCGACCAACTGGATATCTTCCAGGAAGCCGGTGCCTGCGGGACGGCTGCCGTGATTTCGCCGATCGGCGGTATCGAGTACCAGGGCAAACTGCACGTGTTCTACAGCGAGACCGAAGTCGGCCCGATCACCCAGAAGCTCTATAAAGAGCTGACCGGCGTGCAATCCGGCGACGTCGAAGCGCCAGAAGGCTGGATCGTCAAGGTCTAACCCCGCCACACGGCAAGCCCCCTCCCACATTTGATCTGCAACAAAGAAGACAGACC

Ace file of the UniGene sp_v3.0_unigene154245 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Branched-chain-amino-acid aminotransferase n=3 Tax=Pseudomonas fluorescens RepID=C3JYW3_PSEFS	-	-	0.0	89%
FL-Next	sp=Branched-chain-amino-acid aminotransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Sma3	Branched-chain-amino-acid aminotransferase	-	-	1.553e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Branched-chain-amino-acid transaminase.	EC:2.6.1.42	-	5.259e-13	-

Source	KEGGs	Term	e value	Identity
Sma3	Valine, leucine and isoleucine degradation	00280	5.259e-13	%
Sma3	Valine, leucine and isoleucine biosynthesis	00290	5.259e-13	%
Sma3	Pantothenate and CoA biosynthesis	00770	5.259e-13	%
Sma3	Glucosinolate biosynthesis	00966	5.259e-13	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	5.259e-13	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	5.259e-13	%
Sma3	Metabolic pathways	01100	5.259e-13	%
Sma3	Biosynthesis of secondary metabolites	01110	5.259e-13	%

Source	Gene names
Sma3	BCAT; BCAT2; MICPUCDRAFT_47963; MICPUN_106230; OSTLU_31397; Ot04g04970; PHATRDRAFT_50793; THAPSDRAFT_21813;

Source	GOs	Term	Type	e value	Identity
Sma3	branched-chain-amino-acid transaminase activity	GO:0004084	Molecular Function	0.0	-
Sma3	branched chain family amino acid metabolic process	GO:0009081	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class IV	IPR001544	-	-
Sma3	Branched-chain amino acid aminotransferase II	IPR005786	-	-
Sma3	Aminotransferase, class IV, conserved site	IPR018300	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQL0

Fln msg: your sequence is shorter than subject: 170 - 422

Fln protein: GYDRAAPHGTGAAKVGGNYAASLLPGSEAKKAGFADSIYLDPATHSKIEEVGSANFFGITRDNKFITPKSPSVLPGITRMSLIELAKTRLGLEVVEGEVFIDQLDIFQEAGACGTAAVISPIGGIEYQGKLHVFYSETEVGPITQKLYKELTGVQSGDVEAPEGWIVKV*

Protein Length: 171

Fln nts: CGGCTACGACCGCGCCGCGCCACACGGTACCGGCGCCGCCAAGGTCGGTGGCAACTACGCCGCCAGCCTGCTGCCAGGTTCCGAAGCGAAAAAAGCCGGCTTCGCCGACAGCATCTACCTGGACCCGGCCACGCACTCGAAGATCGAGGAAGTCGGTTCGGCCAACTTCTTCGGGATCACCCGAGACAACAAGTTCATCACGCCGAAGTCGCCTTCGGTACTGCCAGGCATCACCCGCATGTCGCTGATCGAACTGGCCAAGACCCGCCTGGGCCTGGAAGTGGTCGAAGGCGAAGTGTTCATCGACCAACTGGATATCTTCCAGGAAGCCGGTGCCTGCGGGACGGCTGCCGTGATTTCGCCGATCGGCGGTATCGAGTACCAGGGCAAACTGCACGTGTTCTACAGCGAGACCGAAGTCGGCCCGATCACCCAGAAGCTCTATAAAGAGCTGACCGGCGTGCAATCCGGCGACGTCGAAGCGCCAGAAGGCTGGATCGTCAAGGTCTAA___CCCCGCCACACGGCAAGCCCCCTCCCACATTTGATCTGCAACAAAGAAGACAGACC

Fln Alignment:

HLKU4M004IW6XE___YDRAAPHGTGAAKVGGNYAASLLPGSEAKKAGFADSIYLDPATHSKIEEVGSANFFGITRDNKFITPK-SPSVLPGITRMSLIELAKTRLGLEVVEGEVFIDQLDIFQEAGACGTAAVISPIGGIEYQGKLHVFYSETEVGPITQKLYKELTGVQSGDVEAPEGWIVKV
B8LQL0________________YHRATPGGTGNVKTIGNYAPVLKVQRSAKTEGFSDVLYLDAINKKYLEEVSSCNIF-VVKDKTVSTPALHGTILSGVTRKSIIEVARSR-GYEVHERLVSVDELMDADEVFCTGTAVVVSPVGSITYLDR-RVTYGNGAPGEVSQELYSALTSIQMGLADDNMGWTIEV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain