SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene154180

Length: 366 nt

UniGene Fasta

>sp_v3.0_unigene154180
ATGGATCTCTCCCACTTGCGCCGGCCCACGGCCTTTGTTCCTTCAACACCTTCATTCTCAAGTTTCCCGGCTCTTCTGCGCATCGCGATCGAACCACAAGCTTCAAGAGACCTTGCTTAATATCTTGACCCTTCCATTTACCCTTCCACACAAGTCTACTATGGCTCGGAAATCTGGCGTGTCTCGCAAGTCGCGCGCCAGCGACATTCAAGCTGGCGACCCTGTTCCCGTACGTGCAAAGCGACGATATCGCCCCGGCACAGTTGCCCTTCGAGAAATTCGCCTCTACCAAGGTCACACCAAGTTGTTGATGCTCAAGCTGCCTTTTGCGCGCCTTGTCCGAGAAATTGCATTGACAGTGCGACC

Ace file of the UniGene sp_v3.0_unigene154180

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H3 (Fragment) n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7Z9Z6_NECH7	-	-	3.0e-18	85%
FL-Next	sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	56%
Sma3	Histone H3	-	-	1.333e-18	-

Source	Gene names
Sma3	At1g75600; CHLREDRAFT_97501; F10A5.19; F10A5.32; F10A5_23; H3; H3 gene; H3-D; HTV1; OSJNBa0063K04.37; OsJ_06616; soH3-1;

Source	GOs	Term	Type	Identity
Sma3	nucleosome	GO:0000786	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	nucleosome assembly	GO:0006334	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histone H3	IPR000164	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone-fold	IPR009072	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G10980.1	Histone superfamily protein chr5:3472591-3473349 REVERSE LENGTH=136	3.0e-12	56%
RefSeq	Arabidopsis thaliana	NP_196659.1	histone H3 [Arabidopsis thaliana]	4.0e-12	56%
RefSeq	Populus trichocarpa	XP_002310848.1	histone H3 [Populus trichocarpa]	4.0e-12	56%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q3ZDK1

Fln msg: Distance to subject end: 55 aas, your sequence is shorter than subject: 68 - 136

Fln protein: MARKSGVSRKSRASDIQAGDPVPVRAKRRYRPGTVALREIRLYQGHTKLLMLKLPFARLVREIALTVR

Protein Length: 69

Fln nts: ATGGATCTCTCCCACTTGCGCCGGCCCACGGCCTTTGTTCCTTCAACACCTTCATTCTCAAGTTTCCCGGCTCTTCTGCGCATCGCGATCGAACCACAAGCTTCAAGAGACCTTGCTTAATATCTTGACCCTTCCATTTACCCTTCCACACAAGTCTACT_-_ATGGCTCGGAAATCTGGCGTGTCTCGCAAGTCGCGCGCCAGCGACATTCAAGCTGGCGACCCTGTTCCCGTACGTGCAAAGCGACGATATCGCCCCGGCACAGTTGCCCTTCGAGAAATTCGCCTCTACCAAGGTCACACCAAGTTGTTGATGCTCAAGCTGCCTTTTGCGCGCCTTGTCCGAGAAATTGCATTGACAGTGCGACC

Fln Alignment:

HLKU4M004JJCKD___RKSGVSRKSRASDIQAGDPVPVRAKRRYRPGTVALREIRLYQGHTKLLMLKLPFARLVREIA
Q3ZDK1________________RKQLATKAARKSAPTTGG---VKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain