SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene154144

Length: 265 nt

UniGene Fasta

>sp_v3.0_unigene154144
TGCAATTCTCGACTGGCAGTGTGGTGAATCGATTCGCCGTTCCCTACAACTTCAAACATGTCTATCCTCTCGTACAATGGTGGTGCCATCGTAGCCATGACTGGCAAGAACTGCGTTGCCATCGCCTGCGATAAGCGGTTTGGCATTCAGCACCAGACGCTGGCATTCAATATGCCCAAAGTGAAGCAGCTCAACTCAAAGACCTTCGTTGGCCTTTCTGGCCTGGTGTCTGATGCTCAGACTCTGTTCAATCGCTTCCAATTCC

Ace file of the UniGene sp_v3.0_unigene154144

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proteasome subunit beta type 3 n=1 Tax=Dictyostelium fasciculatum RepID=F4PJR2_9MYCE	-	-	1.0e-18	63%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Sma3	Proteasome subunit beta type-3	-	-	3.06e-09	-

Source	Gene names
Sma3	CHLREDRAFT_187099; LOC_Os06g43570; MICPUN_91802; OJ1297_C09.31; Os06g0643100; OsI_23870; P0416A11.24; PBC1; POPTRDRAFT_559264; POPTRDRAFT_710740; PSB3; SB65; THAPSDRAFT_38335; psmb;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	proteasome core complex	GO:0005839	Cellular Component	-
Sma3	threonine-type endopeptidase activity	GO:0004298	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	0.0	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G21720.1	PBC1 proteasome beta subunit C1 chr1:7626394-7628070 FORWARD LENGTH=204	1.0e-20	52%
RefSeq	Arabidopsis thaliana	NP_564149.1	proteasome subunit beta type-3-A [Arabidopsis thaliana]	2.0e-20	52%
RefSeq	Populus trichocarpa	XP_002307450.1	predicted protein [Populus trichocarpa]	3.0e-20	56%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRN1

Fln msg: Distance to subject end: 135 aas, your sequence is shorter than subject: 69 - 204

Fln protein: MSILSYNGGAIVAMTGKNCVAIACDKRFGIQHQTLAFNMPKVKQLNSKTFVGLSGLVSDAQTLFNRFQF

Protein Length: 70

Fln nts: TGCAATTCTCGACTGGCAGTGTGGTGAATCGATTCGCCGTTCCCTACAACTTCAAAC_-_ATGTCTATCCTCTCGTACAATGGTGGTGCCATCGTAGCCATGACTGGCAAGAACTGCGTTGCCATCGCCTGCGATAAGCGGTTTGGCATTCAGCACCAGACGCTGGCATTCAATATGCCCAAAGTGAAGCAGCTCAACTCAAAGACCTTCGTTGGCCTTTCTGGCCTGGTGTCTGATGCTCAGACTCTGTTCAATCGCTTCCAATTCC

Fln Alignment:

HLKU4M004JSCZE___MSILSYNGGAIVAMTGKNCVAIACDKRFGIQHQTLAFNMPKVKQLNSKTFVGLSGLVSDAQTLFNRFQF
A9NRN1________________MSIFEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRIFKIHDKLYVGLSGLATDVQTLYQRFAF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain