SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene154079

Length: 251 nt

UniGene Fasta

>sp_v3.0_unigene154079
CGTGTCGTGTTTGCCGAGCTGTCGCTGCGCGCACCAGACATTCTTATTCTTGACGAGCCAACTAACAACCTCGACATTGAGTCCATCGATGCGCTGATCGAGGCGCTCAACGAATACACTGGCGGTGTTGTACTCGTCAGCCACGATGCACGGCTGATCTTGCAGACCAACTGCGTGCTCTATGAATGCGCGAATCGACACATGCAAGCCATTCCGCGGCGACTTTGACGACTATCGCGAGCAGCTGCTTG

Ace file of the UniGene sp_v3.0_unigene154079

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: ATP-binding cassette sub-family F member 1-like isoform 1 [Apis mellifera]	-	-	2.0e-20	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Sma3	ATP-dependent transporter, putative	-	-	1.082e-10	-

Source	Gene names
Sma3	ABCT1; AT3G54540; AT5G60790; At3g54540; At3g54540/T14E10_110; At5g60790; B1130E07.4; B1331F11.24; Fru5_1; GSVIVT00002278001; GSVIVT00002281001; GSVIVT00022186001; LOC_Os03g32630; MICPUN_55988; MICPUN_98118; OJ1004_D04.29; OSTLU_1075; OSTLU_43066; Os03g044

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Thiosulphate sulfurtransferase, conserved site	IPR001307	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3		IPR014778	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G54540.1	ATGCN4, GCN4 general control non-repressible 4 chr3:20190393-20192564 FORWARD LENGTH=723	4.0e-18	69%
RefSeq	Arabidopsis thaliana	NP_567001.1	ABC transporter F family member 4 [Arabidopsis thaliana]	5.0e-18	69%
RefSeq	Populus trichocarpa	XP_002331473.1	ABC transporter family protein [Populus trichocarpa]	7.0e-19	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVC5

Fln msg: your sequence is shorter than subject: 76 - 599

Fln protein: RVVFAELSLRAPDILILDEPTNNLDIESIDALIEALNEYTGGVVLVSHDARLILQTNCVLYECANRHMQAIPRRL*

Protein Length: 77

Fln nts: CGTGTCGTGTTTGCCGAGCTGTCGCTGCGCGCACCAGACATTCTTATTCTTGACGAGCCAACTAACAACCTCGACATTGAGTCCATCGATGCGCTGATCGAGGCGCTCAACGAATACACTGGCGGTGTTGTACTCGTCAGCCACGATGCACGGCTGATCTTGCAGACCAACTGCGTGCTCTATGAATGCGCGAATCGACACATGCAAGCCATTCCGCGGCGACTTTGA___CGACTATCGCGAGCAGCTGCTTG

Fln Alignment:

HLKU4M004IQK44___RVVFAELSLRAPDILILDEPTNNLDIESIDALIEALNEYTGGVVLVSHDARLILQTNCVLYECANRHM
A9NVC5________________RVIFAWLAWRLPHLLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAKEIWVCENKRV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain