SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene154076

Length: 499 nt

UniGene Fasta

>sp_v3.0_unigene154076
GCTCGCGCAAGTTCGGCAACATGGGCTGCGATGGTGGTCTCATGGATCAAGCTTTCACCTACGTCAAGTCCAACAAAGGTATTGACACCGAGGATAGCTACCCATACACCGCTGAGGACGGTCGCTGCAAGTTCAAGACTGATACCGTTGGCGCCACTTGCACTGGCTTCACTGACTTGCCATCGGGCGACGAGGATGCTCTTAAGACCGCCATTGCCACCATTGGCCCAATCTCGGTTGCCATCGACGCCTCGCAAGACAGCTTCCAGTTCTACAGCAAGGGCATTTACTCGGACGAGAACTGCAGCTCGGAGGAGTTGGACCACGGTGTGACCGCTGTTGGCTATGGCTCGCAAAGCCAAGGCAAGGACTTCTACATTGTCAAGAACTCGTGGGGTACCTCGTGGGGTGACCAAGGCTACATTCTCATGGCCCGCAACAAGGACAACATGTGCGGTATTGCTACCATGGCCAGCTACCCATTGGTCTAAACACCAAG

Ace file of the UniGene sp_v3.0_unigene154076

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cathepsin L.1 n=1 Tax=Danio rerio RepID=Q6DHT0_DANRE	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Sma3	Cysteine proteinase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	1.045e-11	-
Sma3	Hydrolases, Acting on peptide bonds (peptide hydrolases), Cysteine endopeptidases.	EC:3.4.22.-	-	4.691e-34	-
Sma3	Cathepsin H.	EC:3.4.22.16	-	3.93e-11	-
Sma3	Papain.	EC:3.4.22.2	-	3.184e-06	-

Source	Gene names
Sma3	AALP; ALEU; AT5G60360; AsNODf32; At1g20850; At1g47128; At3g19390; At3g19400; At3g19400/MLD14.12; At3g45310; At4g35350; At5g43060; At5g43060/MMG4.7; At5g45890; At5g60360; B1417F08.21; BoCP3; BrCP3; CCP2; CP1; CP10; CP2; CP3; CP5; CP6; CPRF; CPRS1; CPRZ; CY

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum lumen	GO:0005788	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	senescence-associated vacuole	GO:0010282	Cellular Component	-
Sma3	cytoplasmic vesicle	GO:0031410	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	cysteine-type endopeptidase activity	GO:0004197	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	developmental programmed cell death	GO:0010623	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Anaphylatoxin/fibulin	IPR000020	-	-
Sma3	Granulin	IPR000118	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase C1A, papain C-terminal	IPR000668	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Ribosomal protein L5	IPR002132	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	MD-2-related lipid-recognition	IPR003172	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Phospholipase A2, active site	IPR013090	-	-
Sma3	Peptidase C1A, papain	IPR013128	-	-
Sma3	Proteinase inhibitor I29, cathepsin propeptide	IPR013201	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3		IPR018069	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3	Ribosomal protein L29, conserved site	IPR018254	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G48340.1	Cysteine proteinases superfamily protein chr3:17897739-17899074 FORWARD LENGTH=361	1.4013e-45	51%
RefSeq	Arabidopsis thaliana	NP_568921.1	thiol protease aleurain [Arabidopsis thaliana]	0.0	48%
RefSeq	Populus trichocarpa	XP_002326284.1	predicted protein [Populus trichocarpa]	0.0	48%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNS0

Fln msg: your sequence is shorter than subject: 163 - 357

Fln protein: SRKFGNMGCDGGLMDQAFTYVKSNKGIDTEDSYPYTAEDGRCKFKTDTVGATCTGFTDLPSGDEDALKTAIATIGPISVAIDASQDSFQFYSKGIYSDENCSSEELDHGVTAVGYGSQSQGKDFYIVKNSWGTSWGDQGYILMARNKDNMCGIATMASYPLV*

Protein Length: 164

Fln nts: GCTCGCGCAAGTTCGGCAACATGGGCTGCGATGGTGGTCTCATGGATCAAGCTTTCACCTACGTCAAGTCCAACAAAGGTATTGACACCGAGGATAGCTACCCATACACCGCTGAGGACGGTCGCTGCAAGTTCAAGACTGATACCGTTGGCGCCACTTGCACTGGCTTCACTGACTTGCCATCGGGCGACGAGGATGCTCTTAAGACCGCCATTGCCACCATTGGCCCAATCTCGGTTGCCATCGACGCCTCGCAAGACAGCTTCCAGTTCTACAGCAAGGGCATTTACTCGGACGAGAACTGCAGCTCGGAGGAGTTGGACCACGGTGTGACCGCTGTTGGCTATGGCTCGCAAAGCCAAGGCAAGGACTTCTACATTGTCAAGAACTCGTGGGGTACCTCGTGGGGTGACCAAGGCTACATTCTCATGGCCCGCAACAAGGACAACATGTGCGGTATTGCTACCATGGCCAGCTACCCATTGGTCTAA___ACACCAAG

Fln Alignment:

HLKU4M004IWWBG___FGNMGCDGGLMDQAFTYVKSNKGIDTEDSYPYTAEDGRCKFKTDTVGATCTGFTDLPSGDEDALKTAIATIGPISVAIDASQDSFQFYSKGIYSDENCSSEELD--HGVTAVGYGSQSQGKDFYIVKNSWGTSWGDQGYILMARNKDNMCGIATMASYPLV
B8LNS0________________FNNFGCSGGLPSQAFEYIKYNGGLDTEEAYPYTAKDGVCNYDVNNVGVKVADSVNISLGAEDKLKSAVGLVRPVSVAFQVIQD-FRFYKEGVFTSTTCGQGPMDVNHAVLAVGYGVSEEGTPHWIIKNSWGKSWGVEGYFKMEMGK-NMCGVATCASYPVV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain