SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene153993

Length: 178 nt

UniGene Fasta

>sp_v3.0_unigene153993
CCTCGTCACCATGGGTATCGATCTTGAGCATAAGCACGTTAAGAACAGCAACAGGACTGCTCCTGTCTCTGAGGATCCTTACCTCCTCTTGTTGGTGAAGCTTTACCGCTTTTTGGCTCGCCGTACCGAGTCCCCCTTCAACAAGGCTGTCCTTAAACGACTTGCCATGAGCCGTACT

Ace file of the UniGene sp_v3.0_unigene153993

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein L18 n=1 Tax=Monosiga brevicollis RepID=A9UXJ0_MONBE	-	-	3.0e-09	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Sma3	Ribosomal protein L18	-	-	2.171e-35	-

Source	Gene names
Sma3	At3g05590; At5g27850; CHLREDRAFT_195589; F14I23.10; F18C1.14; GSVIVT00022684001; GSVIVT00033028001; LOC_Os03g22180; MICPUCDRAFT_25478; OSTLU_33583; Os03g0341100; Os05g0155100; Os07g0674700; OsI_11506; OsI_18515; OsI_27311; OsJ_10788; OsJ_17172; OsJ_25556;

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L18e	IPR000039	-	-
Sma3	Pseudouridine synthase/archaeosine transglycosylase	IPR002478	-	-
Sma3	Uncharacterised domain CHP00451	IPR004521	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NME8

Fln msg: Distance to subject end: 130 aas, your sequence is shorter than subject: 56 - 187

Fln protein: MGIDLEHKHVKNSNRTAPVSEDPYLLLLVKLYRFLARRTESPFNKAVLKRLAMSRT

Protein Length: 57

Fln nts: CCTCGTCACC_-_ATGGGTATCGATCTTGAGCATAAGCACGTTAAGAACAGCAACAGGACTGCTCCTGTCTCTGAGGATCCTTACCTCCTCTTGTTGGTGAAGCTTTACCGCTTTTTGGCTCGCCGTACCGAGTCCCCCTTCAACAAGGCTGTCCTTAAACGACTTGCCATGAGCCGTACT

Fln Alignment:

HLKU4M004JR32Y___MGIDL-EHKHVKNSNRTAPVSEDPYXXXXXXXXXXXARRTESPFNKAVLKRLAMSRT
A9NME8________________MGIDLVAGGKSKKTKRTAPKSEDIYLKLLVKLYRFLVRRTSSSFNAVILKRLFMSKT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain