SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene153949

Length: 168 nt

UniGene Fasta

>sp_v3.0_unigene153949
AAACTTGAAGTACCCGCTGGCAATTGGGTTGATATCATCAAATTAGGTATTCATAAACAAATGGCACCCGTTGATCTTGATTGGTATTATACACGATGTGCATCAATTGCACGTTTTCTTTATTTACGTCGAACAGGTGTTGGTGCCTTTACACGTGTTTATGGTGGA

Ace file of the UniGene sp_v3.0_unigene153949

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein S19 n=1 Tax=Lycosa singoriensis RepID=A9QQ98_LYCSI	-	-	1.0e-13	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G15520.1	Ribosomal protein S19e family protein chr5:5037242-5038136 REVERSE LENGTH=143	2.0e-15	57%
RefSeq	Arabidopsis thaliana	NP_197056.1	40S ribosomal protein S19-2 [Arabidopsis thaliana]	3.0e-15	57%
RefSeq	Populus trichocarpa	XP_002323893.1	predicted protein [Populus trichocarpa]	2.0e-15	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NKW9

Fln msg: Distance to subject end: 62 aas, your sequence is shorter than subject: 56 - 144

Fln protein: KLEVPAGNWVDIIKLGIHKQMAPVDLDWYYTRCASIARFLYLRRTGVGAFTRVYGG

Protein Length: 57

Fln nts: AAACTTGAAGTACCCGCTGGCAATTGGGTTGATATCATCAAATTAGGTATTCATAAACAAATGGCACCCGTTGATCTTGATTGGTATTATACACGATGTGCATCAATTGCACGTTTTCTTTATTTACGTCGAACAGGTGTTGGTGCCTTTACACGTGTTTATGGTGGA

Fln Alignment:

HLKU4M004IM65Y___KLEVPAGNWVDIIKLGIHKQMAPVDLDWYYTRCASIARFLYLRR-TGVGAFTRVYGG
A9NKW9________________KIELP--HWTDLVKTATFKELAPYDPDWYYVRAASMARKIYLRKGIGVGAFSKIYGG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain