SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene153913

Length: 313 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene153913
TCAAGTCGAAGGCCAACAGCGAAGAGGCGGTGACCACGCAGTTTGAGATCAGCGACAACATGTATGCCAAGGCGACGATCAAGAAGCCGAAGGCGGTGGGCATCTGGCTCGGCGCCAACGTGATGGTGGAGTACTCCTTCGACGAGGCGGTCGAGCTGCTGCAGAAGAACCTCGCCACCGCGAAGAAGAGTCTGGCCGAGGTGGAGGACGACCTGGACTTTGTGAAGGAGCAGATCACCATCATCGAAGTCAACATTGCGCGCATTTACAACCACGACGTCAAGATGCGCCGGCGAGCGAAGGCACTCGCCGC

Ace file of the UniGene sp_v3.0_unigene153913 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to putative prefoldin n=1 Tax=Nasonia vitripennis RepID=UPI00015B62EC	-	-	1.0e-22	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Sma3	cDNA clone:J023091J19, full insert sequence	-	-	6.823e-06	-

Source	Gene names
Sma3	LOC_Os12g37590; Os12g0562900; OsI_38735; OsJ_36518;

Source	GOs	Term	Type	Identity
Sma3	prefoldin complex	GO:0016272	Cellular Component	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Prefoldin subunit	IPR004127	-	0.0	-
Sma3	Prefoldin, subunit 3	IPR016655	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G49510.1	PFD3 prefoldin 3 chr5:20080729-20082456 FORWARD LENGTH=195	1.0e-24	46%
RefSeq	Arabidopsis thaliana	NP_199762.1	putative p	1.0e-24	46%
RefSeq	Populus trichocarpa	XP_002314961.1	predicted protein [Populus trichocarpa]	2.0e-25	47%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P224

Fln msg: STOP codon was not found. Distance to subject end: 2 aas, your sequence is shorter than subject: 103 - 182

Fln protein: KSKANSEEAVTTQFEISDNMYAKATIKKPKAVGIWLGANVMVEYSFDEAVELLQKNLATAKKSLAEVEDDLDFVKEQITIIEVNIARIYNHDVKMRRRAKALA

Protein Length: 104

Fln nts: TCAAGTCGAAGGCCAACAGCGAAGAGGCGGTGACCACGCAGTTTGAGATCAGCGACAACATGTATGCCAAGGCGACGATCAAGAAGCCGAAGGCGGTGGGCATCTGGCTCGGCGCCAACGTGATGGTGGAGTACTCCTTCGACGAGGCGGTCGAGCTGCTGCAGAAGAACCTCGCCACCGCGAAGAAGAGTCTGGCCGAGGTGGAGGACGACCTGGACTTTGTGAAGGAGCAGATCACCATCATCGAAGTCAACATTGCGCGCATTTACAACCACGACGTCAAGATGCGCCGGCGAGCGAAGGCACTCGCCGC

Fln Alignment:

HLKU4M004J0EKI___SKANSEEAVTTQFEISDNMYAKATIKKPKAVGIWLGANVMVEYSFDEAVELLQKNLATAKKSLAEVEDDLDFVKEQITIIEVNIARIYNHDVKMRRRAK
A9P224________________AKQGTGEATIVDFEVAEGIYSQARIEATNSVCLWLGANVMLEYSCDEALDLLKKNLDNANAGLGAIVEDLQFLRDQVTITEVTIARVYNWDVHQRRKLR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain