SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene153897

Length: 256 nt

UniGene Fasta

>sp_v3.0_unigene153897
CCACAACAAAAGAGATCGCGGCAACAATGTCAAAACGAGTTCACTTCAACACATACGGAGGAAACCCAATCAGTTCTGCAATTGGCAGAGAAGTTTTGAAAATCATCGATCGCGAAAACCTTCAAAAGAATTGTTTGGAACGAGGAAATCAATTCCTCAATGGAATGAATAAATTAAAAGAGAAATATAGCATTATTGGTGACGTCAGAGGAAAAGGATTGATGTTGGGAATGGAGCTTGTTAAAAATAGAGATAC

Ace file of the UniGene sp_v3.0_unigene153897

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aminotransferase n=1 Tax=Naegleria gruberi RepID=D2V194_NAEGR	-	-	4.0e-28	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Sma3	Putative aminotransferase	-	-	1.182e-07	-

Source	Gene names
Sma3	AGT2; CHLREDRAFT_133057; GSVIVT00023979001; Os05g0475400; OsI_20323; OsJ_18908; P0486C01.19; PHYPADRAFT_178763; POPTRDRAFT_835604; POPTRDRAFT_866890; RCOM_1230590;

Source	GOs	Term	Type	e value	Identity
Sma3	transaminase activity	GO:0008483	Molecular Function	0.0	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Aminotransferase class-III	IPR005814	-	0.0	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G08860.1	PYD4 PYRIMIDINE 4 chr3:2696754-2699087 REVERSE LENGTH=481	7.0e-23	51%
RefSeq	Arabidopsis thaliana	NP_187498.1	PYRIMIDINE 4 [Arabidopsis thaliana]	9.0e-23	51%
RefSeq	Populus trichocarpa	XP_002323655.1	predicted protein [Populus trichocarpa]	7.0e-26	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW66

Fln msg: Distance to subject end: 59 aas, your sequence is shorter than subject: 84 - 482

Fln protein: TTKEIAATMSKRVHFNTYGGNPISSAIGREVLKIIDRENLQKNCLERGNQFLNGMNKLKEKYSIIGDVRGKGLMLGMELVKNRD

Protein Length: 85

Fln nts: CCACAACAAAAGAGATCGCGGCAACAATGTCAAAACGAGTTCACTTCAACACATACGGAGGAAACCCAATCAGTTCTGCAATTGGCAGAGAAGTTTTGAAAATCATCGATCGCGAAAACCTTCAAAAGAATTGTTTGGAACGAGGAAATCAATTCCTCAATGGAATGAATAAATTAAAAGAGAAATATAGCATTATTGGTGACGTCAGAGGAAAAGGATTGATGTTGGGAATGGAGCTTGTTAAAAATAGAGATAC

Fln Alignment:

HLKU4M004JPO1L___TTKEIAATMSKRVHFNTYGGNPISSAIGREVLKIIDRENLQKNCLERGNQFLNGMNKLKEKYSIIGDVRGKGLMLGMELVKNR
A9NW66________________TTPEIAQVLTQRSHCVTFGGNPVCTAGGHAVLKVLDKEKRQEHCAVVGAHLINRLKELQDKYEIIGDVRGRGLMVGVELVTDR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain