SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene153858

Length: 398 nt

UniGene Fasta

>sp_v3.0_unigene153858
AAGCAATACCATCGTATCCTCAAACGACGTCAGGCGAGGATGAAGCTCGAGGCCAGATTCAAGGTCATCCCACGCAAGGAGTGGCTGCACGACTCGCGGCACCAGCACGCCAAGAACCGCATGCGCGGTCCGGGAGGCCGCTTCTTGAGCAAGGAGGAGCGCGAGAAGTACGGCGATGGCGACATGCCAAAGGAGGAGAATTCCTCGCCAAACGGAGCACACTCAGGCTCCTCACCGTCGTCGCCAGCCAACTACCAGAGCTGATAAAGGCGCTGTCCACTTGCTCACTTGCTACCCAGGTCTGCCCTTGTTGTGCATCATTCTACACCACCATCATTCTTCAAGAGGAGGCTGGCTCTTAGCCTTTTGTACATATTTGTGTTGGCTTGTGGTTGAGC

Ace file of the UniGene sp_v3.0_unigene153858

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NFYA, nuclear transcription factor Y, alpha (NFYA, zgc:92567) [Danio rerio]	-	-	1.0e-12	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%

Source	Gene names
Sma3	POPTRDRAFT_561021; WHAP11; WHAP6; WHAP7; WHAP8;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	CCAAT-binding factor complex	GO:0016602	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	CCAAT-binding transcription factor, subunit B	IPR001289	-	0.0	-
Sma3	CCAAT-binding factor, conserved site	IPR018362	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G30500.2	NF-YA7 nuclear factor Y, subunit A7 chr1:10804736-10805896 REVERSE LENGTH=190	4.0e-14	49%
RefSeq	Arabidopsis thaliana	NP_174338.2	nuclear transcription factor Y subunit A-7 [Arabidopsis thaliana]	5.0e-14	49%
RefSeq	Populus trichocarpa	XP_002308270.1	predicted protein [Populus trichocarpa]	8.0e-15	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NU26

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 35 aas, your sequence is shorter than subject: 88 - 286

Fln protein: KQYHRILKRRQARMKLEARFKVIPRKEWLHDSRHQHAKNRMRGPGGRFLSKEEREKYGDGDMPKEENSSPNGAHSGSSPSSPANYQS*

Protein Length: 89

Fln nts: AAGCAATACCATCGTATCCTCAAACGACGTCAGGCGAGGATGAAGCTCGAGGCCAGATTCAAGGTCATCCCACGCAAGGAGTGGCTGCACGACTCGCGGCACCAGCACGCCAAGAACCGCATGCGCGGTCCGGGAGGCCGCTTCTTGAGCAAGGAGGAGCGCGAGAAGTACGGCGATGGCGACATGCCAAAGGAGGAGAATTCCTCGCCAAACGGAGCACACTCAGGCTCCTCACCGTCGTCGCCAGCCAACTACCAGAGCTGATAAAGGCGCTGTCCACTTGCTCACTTGCTACCCAGGTCTGCCCTTGTTGTGCATCATTCTACACCACCATCATTCTTCAAGAGGAGGCTGGCTCTTAGCCTTTTGTACATATTTGTGTTGGCTTGTGGTTGAGC

Fln Alignment:

HLKU4M004JOKTF___KQYHRILKRRQARMKLEARFKVIP-RKEWLHDSRHQHAKNRMRGPGGRFLS-----KEEREKYGDGD
A9NU26________________KQYRGILRRRQSRAKAESENKLIKSRKPYLHESRHRHALRRARGCGGRFLNTKNDGSNEKDVSGDND

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain