SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene153792

Length: 308 nt

UniGene Fasta

>sp_v3.0_unigene153792
AATGGGAAAACAAGGTGGCAGTCAACACGAATATCACAGAAGTCAACGAGTTCTTGGATCACATCATCAAATCAACCAACATGAAGTGTCTCACTCCTCGTTCTTCATTGGATGGAAACTGTGGATTCCTAGCTGCAAATCTTTACGCAAAGAGTATATTCGGTGAAGATGCACTTGCGAACATTTGTATTGAGAAACAACCAGATAACGGAAAGATCAGTGGTTACATTCGAATCAGAAGTAAGACTCAGGGAATCGCTCTCAGTTTGGGTGACAAGATCACTCTCAAACAAAGAGACATCGAAGTC

Ace file of the UniGene sp_v3.0_unigene153792

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative coatmer beta subunit (beta-coat protein) (beta-COP) [Oryza sativa Japonica Group]	-	-	7.0e-39	84%
FL-Next	sp=Coatomer subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Sma3	Coatomer subunit beta	-	-	6.528e-13	-

Source	Gene names
Sma3	At4g31480; At4g31490; BCOP; CHLREDRAFT_195438; COP2; COPB1; COPbeta; F3L17.50; F3L17.60; GSVIVT00025293001; GSVIVT00032317001; LOC_Os01g17430; LOC_Os11g07280; MICPUCDRAFT_32783; MICPUN_104806; OSJNBa0036E02.23; OSJNBa0055G24; OSJNBb0063D09; OSTLU_49385; O

Source	GOs	Term	Type	Identity
Sma3	COPI vesicle coat	GO:0030126	Cellular Component	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Clathrin/coatomer adaptor, adaptin-like, N-terminal	IPR002553	-	-
Sma3	Coatomer, beta subunit, C-terminal	IPR011710	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Coatomer beta subunit	IPR016460	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G31480.1	Coatomer, beta subunit chr4:15264145-15267384 FORWARD LENGTH=948	7.00649e-45	79%
RefSeq	Arabidopsis thaliana	NP_001190880.1	coatomer subunit beta-1 [Arabidopsis thaliana]	8.40779e-45	79%
RefSeq	Populus trichocarpa	XP_002330795.1	predicted protein [Populus trichocarpa]	0.0	82%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PR52

Fln msg: STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 102 - 948

Fln protein: WENKVAVNTNITEVNEFLDHIIKSTNMKCLTPRSSLDGNCGFLAANLYAKSIFGEDALANICIEKQPDNGKISGYIRIRSKTQGIALSLGDKITLKQRDIEV

Protein Length: 103

Fln nts: AATGGGAAAACAAGGTGGCAGTCAACACGAATATCACAGAAGTCAACGAGTTCTTGGATCACATCATCAAATCAACCAACATGAAGTGTCTCACTCCTCGTTCTTCATTGGATGGAAACTGTGGATTCCTAGCTGCAAATCTTTACGCAAAGAGTATATTCGGTGAAGATGCACTTGCGAACATTTGTATTGAGAAACAACCAGATAACGGAAAGATCAGTGGTTACATTCGAATCAGAAGTAAGACTCAGGGAATCGCTCTCAGTTTGGGTGACAAGATCACTCTCAAACAAAGAGACATCGAAGTC

Fln Alignment:

HLKU4M004IP8NV___WENKVAVNTNITEVNEFLDHIIKSTNMKCLTPRSSLDGNCGFLAANLYAKSIFGEDALANICIEKQPDNGKISGYIRIRSKTQGIALSLGDKITLKQR
C0PR52________________WENKVAVNTTIQDEKEFLTHIVNSTNMKCLAPLSALDGDCGFLAANLYAKSVFGEDALVNVSVEKQPD-GKLSGYIRIRSKTQGIALSLGDKITLKQK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain