SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene153737

Length: 405 nt

UniGene Fasta

>sp_v3.0_unigene153737
TGGAGGCCAGCTTCTCATAAAGCCTCGACAATGCCAGCTTATCACTCGAAACACAATAAACTTGCTGCCAAAGAAATGGGAAAACTTCCAATTTTGCCATTTAAAACACAAGTTAAGGGTCCTGCTCCTCCTTGTCTCCCAGGTGAGGAAGAGAAATGGAAGGTTGACATTATCGACGAAGCAATGGATTTCTTTAAAGCGAACGTTCTCTTTCGTAACTTTGAAGTTGAAGGACCTGCTGATCGACTCTTGATTTATGTCACATTATACATCCACCAATGTCTTTGCACCATGAAGGGCAAGTCCAAAGCTGAGGCCACCAAACTTTTGTTTACCCAAGCTCTCTCCAATTTTGCTCTTCCAGGTGAGGGTAAATTTCCTCTCGGTGGAATGGTCTCTGCTCCT

Ace file of the UniGene sp_v3.0_unigene153737

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Actin related protein 2/3 complex n=1 Tax=Dictyostelium fasciculatum RepID=F4QDF7_9MYCE	-	-	6.0e-28	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%

Source	Gene names
Sma3	PHYPADRAFT_167237;

Source	GOs	Term	Type	e value	Identity
Sma3	cytoskeleton	GO:0005856	Cellular Component	0.0	-
Sma3	regulation of actin filament polymerization	GO:0030833	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	ARP2/3 complex, p21-Arc subunit	IPR007204	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB19

Fln msg: Distance to subject end: 53 aas, your sequence is shorter than subject: 125 - 174

Fln protein: MPAYHSKHNKLAAKEMGKLPILPFKTQVKGPAPPCLPGEEEKWKVDIIDEAMDFFKANVLFRNFEVEGPADRLLIYVTLYIHQCLCTMKGKSKAEATKLLFTQALSNFALPGEGKFPLGGMVSAP

Protein Length: 126

Fln nts: TGGAGGCCAGCTTCTCATAAAGCCTCGACA_-_ATGCCAGCTTATCACTCGAAACACAATAAACTTGCTGCCAAAGAAATGGGAAAACTTCCAATTTTGCCATTTAAAACACAAGTTAAGGGTCCTGCTCCTCCTTGTCTCCCAGGTGAGGAAGAGAAATGGAAGGTTGACATTATCGACGAAGCAATGGATTTCTTTAAAGCGAACGTTCTCTTTCGTAACTTTGAAGTTGAAGGACCTGCTGATCGACTCTTGATTTATGTCACATTATACATCCACCAATGTCTTTGCACCATGAAGGGCAAGTCCAAAGCTGAGGCCACCAAACTTTTGTTTACCCAAGCTCTCTCCAATTTTGCTCTTCCAGGTGAGGGTAAATTTCCTCTCGGTGGAATGGTCTCTGCTCCT

Fln Alignment:

HLKU4M004ILYOQ___YHSKH-NKLAAKEMGKLPILPFKTQVKGPAPPCLPGEEEKWKVDIIDEAMDFFKANVLFRNFEVEGPADRLLIYVTLYIHQCLCTMKG-KSKAEATKLLFTQALSNFALPGEGKFPLGGMVSAP
D5AB19________________YHSSFVNEEGITQACGCPLLPLKSHIRGPAPISDPG-----KTDIIDEAITFFRANVFFRKFEVKSPADKLLIYSTLFINMALKRLEGCRTLAEGTKAIINLGLEKVPVPGEPGFPFGGLFALP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain