SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene153616

Length: 198 nt

UniGene Fasta

>sp_v3.0_unigene153616
CACCACATCGTCGACCAGATCGGCATGTTCTCGTTCACCGGACTCCAACCACACCAGGTGAAGGTCCTCACCGACAAGTACCACATCTACCTCGTCTCCAACGGTCGCGTCAGCATGGCTGGCTTCAACACCAAGAACGTTAACTACGTCGCCGATGCTATCAAGGACGCCGTGGTGAACGCCAAGAAGTGAACTCGC

Ace file of the UniGene sp_v3.0_unigene153616

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aminotransferase, classes I and II family protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q23JV0_TETTH	-	-	5.0e-17	65%
FL-Next	sp=Aspartate aminotransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	Aspartate aminotransferase	-	-	2.039e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Aspartate transaminase.	EC:2.6.1.1	-	2.879e-23	-

Source	KEGGs	Term	e value	Identity
Sma3	Alanine, aspartate and glutamate metabolism	00250	2.879e-23	%
Sma3	Cysteine and methionine metabolism	00270	2.879e-23	%
Sma3	Arginine and proline metabolism	00330	2.879e-23	%
Sma3	Tyrosine metabolism	00350	2.879e-23	%
Sma3	Phenylalanine metabolism	00360	2.879e-23	%
Sma3	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	2.879e-23	%
Sma3	Carbon fixation in photosynthetic organisms	00710	2.879e-23	%
Sma3	Isoquinoline alkaloid biosynthesis	00950	2.879e-23	%
Sma3	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	2.879e-23	%
Sma3	Biosynthesis of phenylpropanoids	01061	2.879e-23	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	2.879e-23	%
Sma3	Biosynthesis of plant hormones	01070	2.879e-23	%
Sma3	Metabolic pathways	01100	2.879e-23	%
Sma3	Biosynthesis of secondary metabolites	01110	2.879e-23	%

Source	Gene names
Sma3	AAT; AAT-1; AAT-P1; CRAAT1; PHYPADRAFT_169868; pcAAT2;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	L-aspartate:2-oxoglutarate aminotransferase activity	GO:0004069	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	cellular amino acid metabolic process	GO:0006520	Biological Process	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aspartate/other aminotransferase	IPR000796	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Aminotransferase, class I/classII	IPR004839	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G11520.1	ASP3, YLS4 aspartate aminotransferase 3 chr5:3685257-3687721 REVERSE LENGTH=449	3.0e-17	56%
RefSeq	Arabidopsis thaliana	NP_196713.1	aspartate aminotransferase [Arabidopsis thaliana]	4.0e-17	56%
RefSeq	Populus trichocarpa	XP_002321073.1	predicted protein [Populus trichocarpa]	3.0e-16	53%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUJ0

Fln msg: your sequence is shorter than subject: 64 - 431

Fln protein: HHIVDQIGMFSFTGLQPHQVKVLTDKYHIYLVSNGRVSMAGFNTKNVNYVADAIKDAVVNAKK*

Protein Length: 65

Fln nts: CACCACATCGTCGACCAGATCGGCATGTTCTCGTTCACCGGACTCCAACCACACCAGGTGAAGGTCCTCACCGACAAGTACCACATCTACCTCGTCTCCAACGGTCGCGTCAGCATGGCTGGCTTCAACACCAAGAACGTTAACTACGTCGCCGATGCTATCAAGGACGCCGTGGTGAACGCCAAGAAGTGA___ACTCGC

Fln Alignment:

HLKU4M004IOW0C___HHIVDQIGMFSFTGLQPHQVKVLTDKYHIYLVSNGRVSMAGFNTKNVNYVADAIKDAVVNAKK
A9NUJ0________________NHVTDQIGMFCYSGMTPEQVDRLTSEFHIYLTRNGRISMAGVTTGNVEYLANAIHEVTKSSEK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain